[Freesurfer] Errors in WM surface persistent after manual edits to wm.mgz

2018-12-29 Thread Rachel Hoel
=yellow surf/lh.pial:edgecolor=red surf/rh.white:edgecolor=yellow surf/rh.pial:edgecolor=red Command to submit edits: recon-all -autorecon2-wm -autorecon3 -subjid Thank you in advance, Rachel Hoel Research Assistant Center for Healthy Minds Waisman Center for Brain Imaging and Behavior

[Freesurfer] Including a hyperintensity in wm surface

2019-04-16 Thread Rachel Hoel
External Email - Use Caution Dear Freesurfer Developers, Our study is using the longitudinal processing pipeline with version 6.0. We have one subject where there is a hyperintenisty in the right temporal lobe, and even after adding several control points and running recon-all,

Re: [Freesurfer] Right Lateral Ventricle Omitted from white and pial surfaces

2020-01-14 Thread Rachel Hoel
External Email - Use Caution Thank you, I am still checking in with my supervisors about sending the subject. For now, if we are only interested in looking at grey matter data, do we need to be concerned if the subcortical segmentation isn’t accurate? Best, Rachel __

[Freesurfer] Using freeview to view (and edit?) talairach registrations

2020-03-30 Thread Rachel Hoel
External Email - Use Caution Dear Freesurfer Developers, I'm working with v6.0 on OS Catalina 10.15 and I'm trying to use freeview to check talairach registrations - I've always used tkmedit, so I am running into some issues with the command line for viewing the transform. When