[Freesurfer] Newborn MRI segmentation

Hi experts! I want to perform recon-all pipeline on newborn MRI data. How I can do this? Which atlas you recommend? Any news about infant pipeline? Thanks!! Paula Diniz ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https

[Freesurfer] mri_convert: correspondence between structure values when I convert to minc file

Hello! I have to convert the aseg.mgz file to a minc file, but I lost the structure values reference. Where I can find a convertion table or how I make to recover the structures values reference? Thanks! -- == Paula Rejane Beserra Diniz Bacharel em Informática Bio

Re: [Freesurfer] mri_convert: correspondence between structure values when I convert to minc file

ischl > it's in $FREESURFER_HOME/FreeSurferColorLUT.txt (attached also) > > cheers, > Bruce > > On Fri, 15 May 2009, Paula Diniz wrote: > > Hello! >> >> I have to convert the aseg.mgz file to a minc file, but I lost the >> structure >> values

[Freesurfer] when recon-all stoped

Hi I was running recon-all -all when the computer was turned off. I can restart the recon-all in the point that it stopped?How? Thanks 2009/5/15 Paula Diniz > Hello! > > I have to convert the aseg.mgz file to a minc file, but I lost the > structure values reference. > Whe

Re: [Freesurfer] when recon-all stoped

e done for `all'. 2009/5/26 Nick Schmansky > recon-all -s subj -make all > > On Tue, 2009-05-26 at 17:47 -0300, Paula Diniz wrote: > > Hi > > > > I was running recon-all -all when the computer was turned off. I can > > restart the recon-all in the point that

[Freesurfer] substantia nigra's segmentation

Hello! How I do for make segmentation of substantia nigra using freesurfer? Thanks! -- == Paula Rejane Beserra Diniz Bacharel em Informática Biomédica Mestre em Neurociências Doutoranda em Neurociências Universidade de São Paulo Hospital das Clínicas - Ribeirão P

[Freesurfer] problems with qdec

Hello I`m problems with the levels files. The error is : Loading data table /Users/paula/Freesurfer_ELT_primeiro_trabalho/qdec/qdec.table.dat... Number of columns: 5 fsid column:1 Number of factors: 4 Number of subjects: 52 Reading discrete factor levels from config file /Users/paula/Free

[Freesurfer] Post-surgery images

Hello! I would like to know if someone has experience with segmentation of post-operative images using freesurfer. Thanks! Paula -- == Paula Rejane Beserra Diniz Bacharel em Informática Biomédica Mestre em Neurociências Doutoranda em Neurociências Universidade de

[Freesurfer] Paula Diniz wants to stay in touch on LinkedIn

LinkedIn Paula Diniz souhaite se connecter à vous sur LinkedIn : -- Freesurfer, I'd like to add you to my professional network on LinkedIn. - Paula Diniz Accepter l'invitation de Paula Diniz http://www.link

[Freesurfer] Rejoindre mon réseau sur LinkedIn

LinkedIn Paula Diniz souhaite se connecter à vous sur LinkedIn : -- Je vous invite à faire partie de mon réseau professionnel en ligne sur le site LinkedIn. Accepter l'invitation de Paula Diniz http://www.linkedin.com/e/-w