Do not run your jobs on seychelles. Most nodes are still CentOS4 and I
think a lot of the tools are simply not going to run on CentOS4 anymore.
Run them on launchpad and if you still get errors then we need to investigate.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Mon, 4 Jun 2012 2
I am assuming you are on a OSX box which has that stupid protection.
Just open a Terminal and run
cat > $FREESURFER_HOME/.license
then type in the 3 lines and Enter and then do a Control-D to exit
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Sun, 17 Jun 2012 1:45am, Mon
. Can also try running
within a CentOS6 or earlier docker container.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Fri, 6 Oct 2017 4:53pm, Mike Schmidt wrote:
> I am re-running some old scans on current hardware to do comparisons with
> 5.2.0 output from old hardware, 5.2.0 outpu
a -s
| Filesystem blocks quota limit grace files quota limit
| homes:/local_mount/homes/011
| 1746M 3907M 3956M 20004 0 0
and I see I am using 1.7GB out of my 4GB home directory quota.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
quot;mount /data". Then change the permissions on /data so
you can write to it as the normal login user using the chown & chmod commands.
Then 'exit' to get out of the sudo shell.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Thu, 10 May 2012 2:30pm, Trietsch, Rayna wrote:
What are you using to maeasure the CPU use? Freesurfer is a single threaded
application. If you have a multiple CPU/core box, some CPU monitor programs
often show a CPU usage of only '25%' on a 4 core box when a single threaded
program is running at full CPU use.
On Thu, 28 May 2009, Pedro
What is the exact tar command line you used? It is a gzipped archive
so you have to give tar the 'z' option to uncompress it.
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Sorry, ignore my response. I see from the output gzip was getting
called. So I can only concluded you got a corrupted copy on your
download. YOu should erase it and try downloading again.
On Tue, 16 Jun 2009, Paul Raines wrote:
What is the exact tar command line you used? It is a gzipped
&cs=ukbsdt1&sku=490-10929
>
> Will these be up to spec for use with Free Surfer? I am planning to use
> these with Ubuntu. Is there anything I should know about before I take the
> plunge and buy them?
>
> Thanks in advance for your help
>
> Sam
>
--
---
s now caused our display issues, since
> they were not presenting yesterday (or the day prior).
> Thanks,
> Lindsay
>
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Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Ce
his message was checked by NOD32 antivirus system.
http://www.eset.com
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Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street
770
[EMAIL PROTECTED]
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Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street Charlestown, MA 02129USA
__
anguage, and Hearing Sciences
(520) 621-9878
[EMAIL PROTECTED]
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Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301)
un dypyinfo, it lists both GLX and SGI-GLX. Does this mean that I
still need to install a X11 video driver? Or is it a different problem?
Thanks again,
sarah
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Wednesday, November 28, 2007 3:26 PM
To: Sarah Andersen
Cc: 'Paul Raines'; frees
ks,
Mike H.
--
---
Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street Charlestown, MA 02129
freesurfer
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a noticeably slow redraw rate.
Thanks,
Brian Hanna
CMRR
University of Minnesota
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-7.2.el5.i386.rpm
Looks like the current ones are 7.5. SO if the 7.2 ones work, then
something was introduced since then.
On Thu, 24 Apr 2008, Brian Hanna wrote:
Yes, that makes sense. But what libraries can I use to run tksurfer -without-
installing the Nvidia libraries?
Paul Raines wrote
GLoverride:/usr/lib/GLoverride';
}
What is in those libraries - where did they come from? Perhaps this is the
approach I need to use - leave the standard distro GL libraries in place, and
put the Nvidia libraries into another location for use only by vnc.
Thanks,
Brian
Paul Raines wr
a bit: look for instances of /usr/pubsw/packages, which point to our
installation of VNC.
Nick
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MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
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@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
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ard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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MGH/MIT/HMS Athinoula A. Martinos Cent
"
Depth 16
Modes "1600x1200" "1280x1024" "1024x768" "800x600" "640x480"
EndSubSection
EndSection
Section "Extensions"
Option "Composite" "Disable"
EndSection
-Original Message---
vice "aticonfig-Device[1]"
Monitor"aticonfig-Monitor[1]"
DefaultDepth 24
SubSection "Display"
Viewport 0 0
Depth 24
EndSubSection
EndSection
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quot;Quadro FX 3450/4000 SDI"
59,71c64,72
< Identifier "Screen0"
< Device "Videocard0"
< Monitor "Monitor0"
< DefaultDepth 16
< SubSection "Display"
< Viewport 0 0
<
surfer
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MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street Charlestown, MA 02129USA
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;
> Thanks,
> Dahlia.
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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e-mail was sent to you in
>> error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
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> Freesurfer@nmr.mgh.harvar
We have a system outage this weekend so freesurfer download is
unavailable. Try again Sunday
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MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149
Yes we had maintenance
Should be back online now
---
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MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 13th Street Charlestown, MA 02129
)726-0307
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
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2GB sounds like you reaching maybe a file size limit of your operating
system if it is really old. Or if you have are trying to download to a
FAT formated external USB drive or such.
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Mon, 3 Sep 2012 11:32am, Bruce Fischl wrote:
Hi Dix
Instead of FTP, you could try getting the files via HTTP at
http://surfer.nmr.mgh.harvard.edu/ftp/dist/freesurfer/
-- Paul Raines (http://help.nmr.mgh.harvard.edu)
On Tue, 4 Sep 2012 6:19pm, Dix Meiberth wrote:
Thx for your responses. But no, I try to copy to my harddrive on my 1 year old
really do not know the reason why it should
work, but if you append the tcltktixbli/lib, /usr/lib and /usr/lib64
on 64 bit version *in this order*, the tksurfer problems are solved. ...
--
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Paul Rainesemail: rain
Try again with 'strace -f -F tksurfer ...' to make sure forks are
followed.
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---
Paul Rainesemail: raines at nmr.mgh.harvard.edu
MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging
149 (2301) 1
em
with my installation
of FSL, but upon a total uninstall of centos5 and reinstall it still
is uncooperative, any
help would be really appreciated, thanks
Andy
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