Re: [Freesurfer] Freesurfer recon all

2021-01-29 Thread Paul, Rahul
the text in the email so we can search and copy and paste and such Cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Paul, Rahul Sent: Friday, January 29, 2021 12:24 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Fw: Freesurfer recon all

[Freesurfer] error while running mri_glmfit-sim command

2021-05-05 Thread Paul, Rahul
Hi Freesurfer Experts, I am having some error while running mri_glmfit-sim command ERROR: cannot find /Applications/freesurfer/average/mult-comp-cor/fsaverage/lh/cortex/fwhm56/abs/th20/mc-z.csd I was using the following command: mri_glmfit-sim --glmdir lh.class2_age.glmdir --cache 4 abs -

[Freesurfer] Freesurfer version confusion

2021-09-19 Thread Paul, Rahul
Hi freesurfer experts, I was using FreeSurfer v6 for my research. Recently, I started move to FreeSurfer v7.2. I encountered the following issue: Some patients, that had extra large error (xL error), were running fine (recon-all) in freesurfer 6 (it took time, but the process finished, and the

[Freesurfer] Freesurfer version

2021-09-22 Thread Paul, Rahul
Hi freesurfer experts, I was using FreeSurfer v6 for my research. Recently, I started move to FreeSurfer v7.2. I encountered the following issue: Some patients, that had extra large error (xL error), were running fine (recon-all) in freesurfer 6 (it took time, but the process finished, and the

[Freesurfer] White matter

2021-12-07 Thread Paul, Rahul
Hi FreeSurfer experts, I know that FreeSurfer genrates WM information (area/volume) for smaller cortical regions (e.g, superiortemporal, supramarginal) along with the GM information. But, I was wondering is there a way to generate larger WM structures (e.g., temporal lobe or parietal lobe) usi

[Freesurfer] Visualization of data

2022-01-14 Thread Paul, Rahul
Hi FreeSurfer experts, I have a dataset of 60 patients. Is there a way to visualize the average cortical thickness/area for my dataset? Thank you in advance. Rahul ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard