[Freesurfer] 전달: fsfast fmcpr was not created.

Hello I did recon-all of dementia patient images. Recon-all -s 0101RG-ana finished without error on the terminal. After I ran fsfast preproce-sess, 7 files didn't exist in the output folder. ;1.register.dof6.dat, 2.fmcpr.nii, 3.fmcor.mc.dat, 4.mcprextreg, 5.fmcpr.sm5.fsaverage.lh.nii, 6.fmcpr.sm5.

[Freesurfer] error mni152 reg

Hello Freesurfer mni152reg --s 0201JB-anat => mkdir: cannot create directory `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': Permission denied. Thus I put this command following the way of searching freesurfer mail support. chmod ugo+w /usr/pubsw/packages/fsl/current/dat

[Freesurfer] Freesurfer/bin/mni152reg version update

Dear Freesurfer team I am a new user in the martinos center. I met a problem when I ran mni152reg on the martinos workstation, gencess. I realized it was a bug related to an old version of mni152reg on the e-mail Freesurfer team sent. Thus I am going to copy a new version of mni152 reg v 2014 i

[Freesurfer] bbresiter tee: disk quota exceeded

Hello freesurfer team When I ran bbregister functional image to T1, I got error message as follows: setenv SUBJECTS_DIR /autofs/cluster/catanagp/users/jumi/subjects/AD/0201JB cd /autofs/cluster/catanagp/users/jumi/subjects/AD/0201JB/0201JB-fsfast/sess01/bold/008/FS /usr/local/freesurfer/stable5_3

[Freesurfer] errors after mri_matrix_multiply and tkregister2

Hello Freesurfer team I got a warning message when I checked tkregister2 after I did mni152.reg, mri_matrix_multiply command. I got warning messages and found that the axial image was suddenly showed up on coronal window view on tkregister2. The error messages as follow like this: [gencess:008

[Freesurfer] preproc-sess creates files

Hello Freesurfer team When I ran preprc-sess of dementia patient's fmri, fmcpr.nii. files and register.dof6.dat were not created automatically after preproc-sess. Thus I had to bbregister in two dementia patients manually. However recently I did preproc-sess in the another patient, fmcpr.nii and

[Freesurfer] tkregister2 erros between bold and mni152 through registeration of T1 to mni152

Hello Freesurfer expert I got two errors when I registered bold image to patient's own T1 image and registered T1 to mni152 and got transform data (reg.mni152. data) between bold and mni152. 1) I typed tkregister2 --targ $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz --mov template.nii.gz --reg

[Freesurfer] Recon-all terminated abruptly

Hello Freesurfer expert Recon abruptly terminated with error message from the recon-all. log: #@# Skull Stripping Mon Jul 6 13:16:25 EDT 2015 /autofs/cluster/scratch/monday/jungmi/anat_subjects/r0401AG/mri mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -T1 -brain_atlas

[Freesurfer] unpack error

Hi Freesurfer team I did unpacksdcmdir successfully before at Martinos center. Recently I got error message while I was trying to unpacksdcmdir. ; Cannot open /autofs/cluster/scratch/monday/jungmi/data_parent/0201JB/scan.info There was some messages in unpack.log; INFO: found 4276 Siemens fil

[Freesurfer] Recon-all error

Hello Freesurfer expert I got an error message while running recon-all. 1) subject name gencess SUBJECTS_DIR: /space/sake/3/users/inverse/subjects PWD: /autofs/cluster/catanagp/users/jumi/subjects/anat/AD0401AG/anat/scripts setenv SUBJECTS_DIR /space/sake/3/users/inverse/subjects cd /au

[Freesurfer] recon-all error_cannot find or read transforms/talairach.m3z

Hello Freesurfer expert Running recon-all abruptly stopped with this error message at NMR center; mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z ERROR: cannot find or read transforms/talairach.m3z ERROR: mri_ca

[Freesurfer] mri_convert error

Hello When I tried to run mri_convert brain.mgz to get brain.nii to get betted brain. nii, I received an error message following next: mri_convert -it mgz -i brain.mgz -ot nii -o brain.nii.gz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from brain.mgz... TR=2530.00,

[Freesurfer] FSL GUI error message

Hello When I ran FSL GUI on the Martinos center after typing source freesurfer, I received an error message like that custom widget with id loop-button does not return a valid node on the X-window terminal. How can I solve this problem? Thanks Jung Mi I used FSL 5.0.7, FEAT tool v 6.00 for

[Freesurfer] error in FSL group analysis

Hello FS expert While I ran higher level analysis using FSL feat, I received an error message. Does it mean this computer needs to update the FSL program? Computer: brain-vision at martinos center FS environment 5.3 FSL 5.0.7 /usr/pubsw/packages/fsl/current/bin/fsl_sub -T 60 -l logs -N feat4_po