receiving any unusual
errors? Is there a lower resolution or less accurate segmentation of other
cortical or subcortical structures? Any input would be great.
Cheers,
Noah Markowitz
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unsure if the runtime folder needs to be placed in the FS
folder or is fine where it is.
Any FS experts help with these two problems and concerns? Much appreciated if
you do.
Cheers,
Noah Markowitz
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>
>
> - Original Message -
> From: "Noah Markowitz"
> To: freesurfer@nmr.mgh.harvard.edu
> Sent: Friday, July 3, 2015 4:20:02 AM
> Subject: [Freesurfer] Help with V6
>
> Hi,
>
> I’m trying to run the ‘beta’ version of FS6, centos
On the surface it seems like you moved the FS directory from one pathway to
another. If you place FS back into your applications folder, it may work. Also,
if you have Matlab 2014b or 2015a installed, it won’t work. You need
2012b-2014a for the process to run.
Hope this helps in any way.
Noah
Hi,
I’m running FS6 and everything seems to be running fine except that a txt file
filled with this error message is created:
rm: No match.
tkregister2_cmdl: Command not found.
tkregister2_cmdl: Command not found.
tkregister2_cmdl: Command not found.
tkregister2_cmdl: Command not found.
tkregist
Hi all, I’m trying to extend the pial surface to include missing GM. Part of
the problem is that the wm.mgz seems to include the WM, but does not extend the
border of the pial surface. I’ve attached links to pictures of the one of the
scans. Any help would be greatly appreciated.
Noah
Without
Hi, I just sent a question a few minutes ago but forgot to include an important
bit in it. Some pial I’m trying to include doesn’t have WM to add that will
push the pial surface back. I attached a link to an example. This happens in
the parietal lobe, temporal pole, as well as frontal pole. Any
Hi all,
As I’m doing manual edits, one of my subjects stops running due to the
following error:
ERROR: could not read subj1/mri/rawavg.mgz as type 3
Any ideas how to correct this? Please let me know.
Noah
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Hi all,
I’m trying to get the coordinates for specifice vertices of an inflated
surface. I noticed there’s a difference between surfaceRAS and vertex
coordinates (though I don’t understand it much).
After getting the index of the specific vertex of
