[Freesurfer] Problem flipping a label into other hemisphere

2017-10-11 Thread Neuro Lists
Hi all, I've searched the lists extensively and have not been able to resolve my problem. I'd greatly appreciated any help. I have run the recon-all pipeline on a number of subjects, made the appropriate fixes and am happy with the surfaces. For each subject, I have a number of ROIs that are creat

Re: [Freesurfer] Problem flipping a label into other hemisphere

2017-10-12 Thread Neuro Lists
2017 at 5:06 AM, Douglas Greve wrote: > Try > > mris_apply_reg --src-label your.lh.label --trg your.rh.label -streg > lh.sphere.left_right rh.sphere > > On 10/11/17 5:43 PM, Neuro Lists wrote: > > Hi all, > I've searched the lists extensively and have not been able t

Re: [Freesurfer] Problem flipping a label into other hemisphere

2017-10-13 Thread Neuro Lists
Hi all, I was just wondering if there was any further insight into what I might be doing wrong on this. Thanks again! On Thu, Oct 12, 2017 at 10:30 AM, Neuro Lists wrote: > Hi Doug and Bruce, > I forgot to mention that I had tried that as well but without success. As > a sanity che

Re: [Freesurfer] Problem flipping a label into other hemisphere

2017-10-17 Thread Neuro Lists
.label --streg > ../surf/lh.sphere.left_right ../surf/rh.sphere.left_right > > On 10/13/17 2:58 PM, Neuro Lists wrote: > > Hi all, > I was just wondering if there was any further insight into what I might be > doing wrong on this. > > Thanks again! > > &g

Re: [Freesurfer] Problem flipping a label into other hemisphere

2017-10-17 Thread Neuro Lists
.label --trg lh_flip.BA45.label --streg ../surf/lh.sphere.left_right ../surf/rh.sphere.left_right Have I misunderstood something? Thanks again! On Tue, Oct 17, 2017 at 4:55 PM, Douglas N Greve wrote: > Is this fsaverage or one of your own subjects? > > > > On 10/17/2017 02:18

Re: [Freesurfer] Problem flipping a label into other hemisphere

2017-12-27 Thread Neuro Lists
../label mris_apply_reg --src-label lh.BA45.label --trg lh_flip.BA45.label --streg ../surf/lh.sphere.left_right ../surf/rh.sphere.left_right I tried a few different combinations of mris_left_right_register but without luck. Thanks! On Tue, Oct 17, 2017 at 11:55 PM, Neuro Lists wrote: > > Hi,