[Freesurfer] Tracula configuration error

2013-10-12 Thread Michael Datko
Hello, I have been trying to set up a working Tracula configuration file and I keep getting an error: set: Variable name must begin with a letter I have searched previous message board questions and it seems that others have seen this same error. I have tried implementing some of their solutions

[Freesurfer] Tracula preprocessing error: cannot find dwi_frames.nii.gz

2013-10-21 Thread Michael Datko
Hello, I am running into a tracula error very early in the preprocessing steps. I have data that was already somewhat preprocessed (reconstruction, eddy correction and magnetic field inhomogeneity correction) that I'm trying to use as an input. I have turned off those steps in the tracula configu

Re: [Freesurfer] Tracula preprocessing error: cannot find dwi_frames.nii.gz

2013-10-28 Thread Michael Datko
ration file and trac-all.log. > > Thanks, > a.y > > On Mon, 21 Oct 2013, Michael Datko wrote: > > Hello,I am running into a tracula error very early in the preprocessing >> steps. >> >> I have data that was already somewhat preprocessed (reconstruction, eddy &

Re: [Freesurfer] Tracula preprocessing error: cannot find dwi_frames.nii.gz

2013-10-28 Thread Michael Datko
t; > -Zeke > > > On 10/28/2013 03:17 PM, Michael Datko wrote: > >> Hi Anastasia, >> I've attached my configuration file, and below is pasted the contents of >> the error log. Below that, I've pasted the last few lines of the >> trac-all log (not the

Re: [Freesurfer] Tracula preprocessing error: cannot find dwi_frames.nii.gz

2013-10-28 Thread Michael Datko
-cosine.local 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386 trac-preproc exited with ERRORS at Mon Oct 28 14:13:00 PDT 2013 On Mon, Oct 28, 2013 at 12:52 PM, Michael Datko wrote: > The XQuartz website you linked makes it sound like it

[Freesurfer] Issues with recon-all hanging

2021-06-11 Thread Michael Datko
External Email - Use Caution Hello, I have been collecting data on a 7T scanner, with functional EPI data collected with 1.5mm voxels, and I have been having an issue with some of our data where recon-all just hangs after producing only a small amount of outputs. For instance,

Re: [Freesurfer] Issues with recon-all hanging

2021-06-21 Thread Michael Datko
few subjects at 1mm. Thanks for your help, Mike On Sun, Jun 20, 2021 at 10:45 AM Douglas N. Greve wrote: > Do I understand correctly that you are running recon-all with EPI data? If > so, that will certainly not work. > > On 6/11/2021 11:46 AM, Michael Datko wrote: > >