[Freesurfer] hippocampal subfields error

2018-10-03 Thread Marcel Heers
External Email - Use Caution Dear Eugenio, I am currently testing the newest version of your hippocampal subfield analysis script. If I process the data on my macbook the files hipposubfields.lh.T2.v21.file_ID contain the volumes of the different nuclei, but on the linux server th

[Freesurfer] hippocampal subfields

2018-10-08 Thread Marcel Heers
External Email - Use Caution Dear Eugenio, there is one error in the error.log: 'Could not set locale'. Best regards Marcel ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/fr

[Freesurfer] Scripts to prepare MP2RAGE sequence for recon-all pipeline

2018-11-16 Thread Marcel Heers
External Email - Use Caution Dear all, does anyone share scripts to prepare MP2RAGE sequences for freesurfer's standard processing pipeline, e.g. the method used by Fuijmoto et al. NeuroImage 2014? Thanks for your help! Marcel ___ Frees

[Freesurfer] hippocampal subfields as masks for mri_segstats

2019-12-04 Thread Marcel Heers
External Email - Use Caution Dear all, (dear Eugenio), I would like to use hippocampal subfields as masks for mri_segstats to retrieve intensity values. I am having problems loading the subfields file although it works fine with aseg.mgz. Does anyone know the cause? Thank you i

[Freesurfer] scalp mesh

2010-05-27 Thread Marcel Heers
Dear all, while I am doing my first steps using freesurfer, I am searching for a scalp mesh, which I could use for the brainstorm toolbox. Is there a scalp mesh produced during recon-all, which I can use for this purpose? Thanks for every hint! Marcel _

Re: [Freesurfer] scalp mesh

2010-05-30 Thread Marcel Heers
y write it out. You can check out > the options to mri_watershed if you want to save it. I think the MNE MEG/EEG > analysis stream does this routinely > > cheers, > Bruce > > On Thu, 27 May 2010, Marcel Heers wrote: > > Dear all, >> >> while I am doing my first

[Freesurfer] FS_7_2_0_Ubuntu_18_04_06.ova.7z password

2022-11-28 Thread Marcel Heers
External Email - Use Caution Can you please share the password for the above mentioned VirtualBox with me? Thanks in advance! Marcel ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/list