[Freesurfer] Matlab crash dump when running the segmentation of longitudinal hippocampal subfields

2019-09-29 Thread Liu Guodong
External Email - Use Caution Hello FreeSurfer Developers, I'm attempting to analyze longitudinal hippocampal subfields for many subjects on a server, but when I run the command longHippoSubfieldsT1.sh, for some subjects, I get the error for Matlab and a file called matlab_crash_

[Freesurfer] LME model contrast matrix

2019-10-22 Thread Liu Guodong
External Email - Use Caution Hello FreeSurfer Developers, I'm doing the LME tutorial, and I have some questions . 1. Why don’t we need to put the healthy controls in the designed matrix X? 2. What’s the interpretation of the first row of the contrast matrix [1 0 0 0 0], does it

Re: [Freesurfer] LME model contrast matrix (Diers, Kersten /DZNE)

2019-11-03 Thread Liu Guodong
; > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- next part ------ &

Re: [Freesurfer] LME model contrast matrix (Diers, Kersten /DZNE)

2019-11-05 Thread Liu Guodong
l where there is an intercept, a > regressor for group A, and a regressor for group B, because in this > case, the regressors would be linearly dependent. Since having an > overall intercept is advantageous (especially in more complex modelling > situations than this toy exampl