[Freesurfer] slice timing for multiband fMRI

2022-03-28 Thread Laura Doll
External Email - Use Caution Hi everyone, We are currently piloting an fMRI measurement with multiband sequence on a 3T Siemens scanner to increase resolution, but I don't know how to do the slice timing correction: I assume, that I have to use a slicedelay file instead of the

Re: [Freesurfer] slice timing for multiband fMRI

2022-03-31 Thread Laura Doll
External Email - Use Caution Are there any suggestions regarding this topic? Am Montag, 28. März 2022 09:21 CEST, "Laura Doll" schrieb: > External Email - Use Caution > > Hi everyone, > > We are currently piloting an fMRI m

[Freesurfer] HRF with derivatives: results

2022-05-25 Thread Laura Doll
External Email - Use Caution Hi everyone, I need some help regarding the SPM-HRF with two derivatives: Where can I find the actual function that was used for the analysis? I am mostly interested in the peak latency, but would also appreciate if I can check the other parameters o

Re: [Freesurfer] HRF with derivatives: results

2022-06-01 Thread Laura Doll
> Look here $FREESURFER/fsfast/toolbox/fast_spmhrf.m > > On 5/25/2022 9:19 AM, Laura Doll wrote: > > External Email - Use Caution > > > > Hi everyone, > > > > I need some help regarding the SPM-HRF with two derivatives: > > Where can I find t

Re: [Freesurfer] HRF with derivatives: results

2022-06-03 Thread Laura Doll
1; >   tau2 = 1; >   ttp1 = 5*tau1;  % 6 % >   ttp2 = 15*tau1; % 16 % >   c  = 1/6; > > > > On 6/1/2022 4:27 AM, Laura Doll wrote: > > External Email - Use Caution > > > > Hi Doug, > > > > Thanks for your hint where to find th

Re: [Freesurfer] HRF with derivatives: results

2022-06-07 Thread Laura Doll
t; The -spmhrf 1 and 2 should have had additional frame in the beta.nii.gz. > Is that what you are looking at? > > On 6/3/2022 4:51 AM, Laura Doll wrote: > > External Email - Use Caution > > > > Okay, thanks. > > But how can I find out the influence of the deri

Re: [Freesurfer] HRF with derivatives: results

2022-06-09 Thread Laura Doll
paradigm files. > If you want that in your task regressor, you will have to do it yourself. > > On 6/7/2022 4:08 AM, Laura Doll wrote: > > External Email - Use Caution > > > > Yes, I think so. That would mean, that the additional frames correspond to > > t