[Freesurfer] Postdoctoral fellowship - NORMENT Oslo

A 3 year postdoctoral fellowship in Multimodal Imaging at NORMENT is currently available. NORMENT is a Norwegian Centre of Excellence, and coordinates a translational multicenter study involving all University hospitals in Oslo and several groups at the Universities of Oslo and Bergen. The main

[Freesurfer] Postdoctoral research fellows, University of Oslo, Norway

2 three-year positions as Postdoctoral Research Fellow at the Norwegian Centre for Mental Disorders Research, University of Oslo are currently available. http://uio.easycruit.com/vacancy/1599437/65775?iso=no NORMENT is a Norwegian Centre of Excellence, and coordinates a translational multicente

[Freesurfer] Postdoctoral Fellow - University of Oslo

A three-year term position as Postdoctoral Fellow (governmental position code 1352) is available at the Norwegian Centre for Mental Disorders Research (NORMENT) and the KG Jebsen Centre for Psychosis Research – TOP Study Group, Institute of Clinical Medicine, University of Oslo and Oslo Univers

[Freesurfer] labels->annot->wmparc

Hi, I have several labels drawn on the white surface of average7 (ancient project). I want to generate one annotation file per hemisphere comprising these labels only in order to use mri_aparc2aseg --labelwm and then compute the volume of the underlying WM of each label. Please see the employed st

[Freesurfer] GLM for longitudinal analyses

Hi, we have structural data at two time points (t1/t2) for two different groups (intervention vs control). After processing the data using the long stream, we want to model the group X time interactions to detect intervention specific changes in cortical thickness over time. Q1) How would you sug

Re: [Freesurfer] ventricles in wm.mgz volume

Hi, I don't know it's related, but we've seen something similar when rerunning recons initially processed in 4.05 in 4.1.0. Even though no initial manual edits had been made to the aseg, a file called aseg.maned.mgz (or something like that) was saved in the mri folder, and the medial/ventrical surf

[Freesurfer] mris_expand

Hi, how can I tell mris_expand to expand the surface by a fixed distance rather than by a fraction of the thickness? Thanks, Lars ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] mris_expand

, > > that is what it does by default, unless you give it the -thickness flag. > > cheers, > Bruce > On > Fri, 24 Jul 2009, Lars Tjelta Westlye wrote: > >> Hi, >> >> how can I tell mris_expand to expand the surface by a fixed distance >> rath

Re: [Freesurfer] mris_expand

u send us > your hardware/software platform we'll send you a dev version > Bruce > > > On Fri, 24 Jul 2009, Lars Tjelta Westlye wrote: > >> Perfect, thanks. I'm also trying to display a surface at a fixed >> distance >> into the WM relative to th

[Freesurfer] Longitudinal -uselongbasectrlvol

Dear all, I'm encountering the following error in the otherwise excellent longitudinal scheme when adding the -uselongbasectrlvol flag: Command: recon-all -long ${s}_tp1 ${s} -all -uselongbasectrlvol -- # #...@# Intensity Normalization Wed Apr 14 18:12

RE: [Freesurfer] tkmedit

Hi, I have a related question. Should the optic nerve included in the pial surface be considered a problem for the surfaces? The nerve also does create a small bump on the inflated surface as viewed in tksurfer. If so, from which volume should the optic nerve be erased? Thanks for your time. La

[Freesurfer] Transformations

nates into the mri_filled command. (that is, mni Talairach coordinates for lh, rh, c.callossum and pons). Are there any alternative transformation commands which may solve this issue? Best wishes, Lars Tjelta Westlye ___ Freesurfer mailing list Frees

[Freesurfer] wm volume

Hi all, is there a way I can attain the total wm volume for each of the hemispheres? And is it possible to estimate the wm volume of certain gross anatomical areas, like the different lobes? Thanks! Best wishes, Lars Tjelta Westlye ___ Freesurfer

Re: [Freesurfer] wm volume

draw the borders? > > cheers, > Bruce > > > On Thu, 5 May 2005, Lars Tjelta > Westlye wrote: > >> Hi all, >> >> is there a way I can attain the total wm volume for each of the >> hemispheres? And is it possible to estimate the wm volume

[Freesurfer] Editing pial surface

2005, and due to time restrictions I am not considering changing to the latest version for this project. Thanks a lot! Best wishes, Lars Tjelta Westlye University of Oslo ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard

[Freesurfer] morph_subject error

Dear all, I'm encountering following error when running morph_subject . What is wrong? . registration took 0.67 hours writing registered surface to ../surf/lh.rh.sphere.reg... /var/lab-data/genetic/id106 /var/lab-data/genetic/id106/scripts /var/lab-data/genetic/id106/scripts -