[Freesurfer] bbregister error -- Human Connectome Project Data

2017-12-27 Thread Lana Ruck
reciated. Thanks in advance! Lana Ruck Console errors (bolded and underlined) for bbregister --init-fsl, bbregister --init-spm, and tkregister2: [lruck@c5 MNINonLinear]$ bbregister --mov ./Results/rfMRI_REST1_LR/REST1LR.img --bold --s 101915 --init-fsl --reg /N/dc2/scratch/lruck/LH_all/101915/

Re: [Freesurfer] bbregister error -- Human Connectome Project Data

2017-12-27 Thread Lana Ruck
could not open file* *No such file or directory* *mri_vol2surf: could not read surface /N/dc2/scratch/lruck/LH_all//101915/surf/lh./N/dc2/scratch/lruck/LH_all/fsaverage4/surf/lh.white* *No such file or directory* Lana Ruck, M.A. Associate Instructor, Department of Anthropology Graduate Schola

Re: [Freesurfer] bbregister error -- Human Connectome Project Data

2017-12-27 Thread Lana Ruck
ta appropriately formatted for parcellation with MATLAB, do you suggest I download the extended packages, or will the compact ones have everything I need? Lana Lana Ruck, M.A. Associate Instructor, Department of Anthropology Graduate Scholars Fellow, Cognitive Science Program Indiana University, Bloom

Re: [Freesurfer] bbregister error -- Human Connectome Project Data

2017-12-28 Thread Lana Ruck
I guess I'm just wondering what the value of the pre-processed data is if it is re-organized as to be un-readable by Freesurfer defaults. Lana Lana Ruck, M.A. Associate Instructor, Department of Anthropology Graduate Scholars Fellow, Cognitive Science Program Indiana University, Bloomington St