[Freesurfer] Reading mris_smooth output using Matlab

2007-11-15 Thread Kim Mouridsen
Hi, We have segmented hippocampus using Freesurfer, and want to generate a surface which can be read into matlab. We use mri_tesselate and mris_smooth. However, the resulting file can not be read into matlab using read_surf. The error we get is ??? Undefined function or variable "vertex_coords".

Re: [Freesurfer] Reading mris_smooth output using Matlab

2007-11-16 Thread Kim Mouridsen
version of freesurfer is being used? > > An alternative approach is to convert the surface to ascii: > > mris_convert surface_file surface_file.asc > > where the .asc extension is an output ascii file listing the vertices > and faces. > > Nick > > On Thu, 2007-11-15

Re: [Freesurfer] Reading mris_smooth output using Matlab

2007-11-16 Thread Kim Mouridsen
/11/16, Bruce Fischl <[EMAIL PROTECTED]>: > Hi Kim, > > we do have some tools for smoothing the hippocampal surfaces, but we > haven't distributed them. I could try to get you a beta version if you > like. > > cheers, > Bruce > On Fri, 16 Nov 2007, Kim Mouri