[Freesurfer] mri_watershed seed point

Hello FreeSurfer Community, I am attempting to use mri_watershed to create BEM surfaces, but for some of my subjects part of the cerebellum is being cut off. Adjusting the threshold was not sufficient, so I attempted to add a seed point in the cerebellum using the following command: mri_water

[Freesurfer] Freeview libpng warning

Hello FreeSurfer community, I am having an issue with the icon graphics displaying properly in freeview (Linux virtual machine - Ubuntu). I receive the following warning when opening the application: "libpng warning: Application built with libpng-1.2.7 but running with 1.6.25" The newer versi

Re: [Freesurfer] Freeview libpng warning

: [Freesurfer] Freeview libpng warning Does freeview still run? If it does, you can just ignore the warning. Best, Ruopeng On May 4, 2017, at 12:39 PM, Kanoff, Kristen Elise mailto:kkan...@mgh.harvard.edu>> wrote: Hello FreeSurfer community, I am having an issue with the icon graphics disp

[Freesurfer] mri_watershed help

Dear Freesurfer community, I am using the mri_watershed command to create BEM surfaces and have run into an issue with a large posterior chunk of skull being treated as brain. [cid:image002.jpg@01D2D47E.75797E70] I have attempted the following to correct the issue: 1.Removed the -atla

Re: [Freesurfer] Transfer files from Windows

Are you running a Linux VirtualBox on a Windows desktop? If so, you should ignore the step that mentions the VBOXSRV directory (that is only relevant if you are running a Windows VirtualBox on a Linux/Mac desktop). If you followed all the instructions in the link provided in the prior response