[Freesurfer] Processing woes

2004-10-08 Thread Kai Schreiber
oTalairachVoxel: unsupported slice direction -1 What gives? Cheers, Kai -- Kai Schreiber PhD, School of Optometry, UC Berkeley 360 Minor Hall, Berkeley, CA 94720-2020, USA Phone ++1 510 642 7710 http://genista.de/kai/kschreiber.html ___ Freesurf

[Freesurfer] pial surface ill defined

2004-12-10 Thread Kai Schreiber
Hi, when we fit a surface to our anatomical data, everything works fine without error messages. However, looking at the fitted surfaces in the end, the original surface / white matter boundary looks fairly good, while the pial surface is not at all related to gray matter and follows the original s

[Freesurfer] white matter fill

2004-12-13 Thread Kai Schreiber
Hi, -what might be causing freesurfer to go through the motions of doing the white matter fill without actually writing any files? I do not find an error message anywhere, the status window shows the fill as "done", but processing stops, because there are no files created. Cheers, Kai ___