[Freesurfer] getting vertex-wise correspondences across subjects

ould you please show me what commands I should be using for the aims as described above? Many thanks, John -- Dr. John Griffiths Post-Doctoral Research Fellow Rotman Research Institute, Baycrest Toronto, Canada and Honorary Associate School of Physics Unive

Re: [Freesurfer] subdividing consistently within aparc.annot

ct the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Mr. John Griffiths, MSc PhD Candid

[Freesurfer] Post-Doctoral Fellowship in Whole Brain Modelling

External Email - Use Caution Post-Doctoral Fellowship in Whole Brain Modelling The Whole Brain Modelling Group (PI Dr. John Griffiths; www.grifflab.com) at the Krembil Centre for Neuroinformatics, Toronto, is looking to hire a Post-Doctoral Fellow with a strong background in

[Freesurfer] mri_surf2surf error - Return code 254

Dear list, I am having the following memory allocation problem when running mri_surf2surf. Can't find any mention of this error on the list or the internet - sorry if I've missed anything. mri_surf2surf --cortex --fwhm 5. --hemi lh --sval /home/jdg45/lh.pial_converted.mgz --tval /home/jdg45/C

Re: [Freesurfer] mri_surf2surf error - Return code 254

are trying I don't >> believe exist at least according to the wiki (e.g. -cortex -fwhm). Are >> you sure you are using the right command? >> >> D >> >> On Tue, Dec 6, 2011 at 1:28 PM, John Griffiths >> wrote: >> >> >>> Dear list,

[Freesurfer] downsampling white matter surface and converting to .tri

Dear FS peeps, I am trying to downsample a (white matter) surface with mri_surf2surf. I also want the output in .tri format. First problem is that mri_surf2surf doesn't let me output in .tri format mri_surf2surf --hemi lh --srcsubject subj1 --sval-xyz white --trgsubject subj1 --trgicoorder 4 -

Re: [Freesurfer] downsampling white matter surface and converting to .tri

l wrote: > Hi John > > try adding --tval-xyz so that it knows you want to write out a surface. > > cheers > Bruce > > > On Thu, 8 Dec 2011, John Griffiths wrote: > > Dear FS peeps, >> >> >> I am trying to downsample a (white matter) su

Re: [Freesurfer] mri_surf2surf error - Return code 254

rface not a scalar field over the >> surface. >> >> cheers >> Bruce >> On Wed, 7 Dec 2011, John Griffiths wrote: >> >> [ Douglas and Dan - sending this again as I didn't sent it to the list >>> address before. Sorry. ] >>> >>&

[Freesurfer] PhD and MSc Opportunities in Computational Neuroscience and Neuroimaging at the University of Toronto

External Email - Use Caution The Whole Brain Modelling Group (PI Dr. John Griffiths; www.grifflab.com) at the CAMH Krembil Centre for Neuroinformatics ( www.krembilneuroinformatics.ca) and University of Toronto is looking for PhD and MSc students with a strong background in

[Freesurfer] Call for submissions: Frontiers Research Topic on “Neuroinformatics of Large-Scale Brain Modelling”

this exciting work with the community. Your Research Topic co-editors, John Griffiths Padraig Gleeson Kelly Shen -- Dr. John D. Griffiths Independent Scientist @ Krembil Centre for Neuroinformatics, CAMH, Toronto Assistant Professor @ Department of Psychiatry & Institute of Med

Re: [Freesurfer] shortest distance between two points along the gray/white boundary

ment of Psychiatry & Institute of Medical Sciences, University of Toronto http://secure-web.cisco.com/1MhotjZ7By4G-C6pnT5xuE07XqjGiirDO7XAIoHbDdqsbUg8qc22dbqNuqsXAmRpB77Fcy2D17tJ5z5VwJjvX06NuTYxlVHXI5ukcZJJpZAiCwqtTWyc22PdCB8ojNkJ9UEEfqbt5_NM_l7sNhxo-QdsDVB3ff6MnwSBRVOaqr2M1uWKP18aNJXWaNiZsBhmLf4KdnmpXRdaHITmo4g3w98ZusuXPW2dD8SNnwuFrq0oJuFxQiXLAUq3sKX_-1Iq_NkVtDfg_n