[Freesurfer] FSL View in the virtual box version?

Hello there! I currently use the virtualbox version of freesurfer on my windows and the CentOS 4 (32b) version on a linux computer. I noticed today that the Virtual box version does not seem to have fsl view. I found this link to a blog where this person has a virtual box that contained fslvie

Re: [Freesurfer] [WARNING : A/V UNSCANNABLE]RE: Left Thalamus and Pallidum segmentation problem

#x27;ll need to upload it to our ftp site cheers Bruce On Tue, 15 Nov 2016, Jeffrey Crawford wrote: > Here is the tar zip of the subject folder. This is the first time I have ever > done this type of compression, so please let me know if anything seems awry. > > -Original

[Freesurfer] Version 6 Beta on Virtual Box problem

Hello everyone! I am currently using Virtual Box to run Freesurfer and I was wondering if my plan to put the version 6 beta on to my current virtual box was a valid one. My plan was to delete the Freesurfer folder off of the 5.3 virtual box and replace it with the Freesurfer version 6 folder. H

Re: [Freesurfer] Version 6 Beta on Virtual Box problem

So, I discovered that I could delete the files inside of the Freesurfer folder, even though I could not delete the Freesurfer folder itself. However, when I replaced the interior of the file with the version 6 folders, I got a bunch of errors when I tried to run my first recon-all: "recon-all -

[Freesurfer] Importance of Symbolic Links?

Hello everyone! I have been fiddling with Version 6 and I have been encountering some difficulty copying Freesurfer folders onto my usb, because my usb cannot write "symbolic links". There are four of them produced by Freesurfer: lh.white.H , lh.white.K, rh.white.H, and rh.white.K. My question

Re: [Freesurfer] Importance of Symbolic Links?

quential to the actual running of qdec or other programs, as long as you are analyzing a different subject. On 11/19/2016 11:45 AM, Jeffrey Crawford wrote: > by Freesurfer: lh.white.H , lh.white.K, rh.white.H, and rh.white.K. > > > > My question is whether these links are important

[Freesurfer] V6 FS eTICV versus CAT12 TICV with Small Heads

Hello everyone! I have some questions about FS eTICV. I read on the Wiki that eTICV is not the best measure of ICV and saw the same from other articles. The alternative I decided on was measuring the TICV using CAT12 from SPM. I decided to do a scatterplot of the eTICV from FS V6 and TICV from

[Freesurfer] freeview error (libpng12.so.0) on Ubuntu

Hello all! I know there are issues with freeview use on Ubuntu, but I hit a wall in fixing them. I am currently getting this error when typing "freeview" into the command prompt: "freeview.bin: error while loading shared libraries: libpng12.so.0: cannot open shared object file: No such file o