[Freesurfer] segmentHA_T1 error DYLD_LIBRARY_PATH

2018-10-30 Thread Jaime Gomez
External Email - Use Caution Hi, I have this error when I try to run segmentHA_T1.sh It seems that it sets up the wrong DYLD_LIBRARY_PATH, the one I have in my bash_profile is /Applications/MATLAB_R2016a.app/bin/maci64:/Applications/MATLAB_R2016a.app/sys/os/maci64:/Applications/MA

[Freesurfer] Matlab Segmentation error when running hippocampal segmentation in dev version

2018-10-30 Thread Jaime Gomez
root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64 T1 hippocampal subfields exited with ERRORS at Tue Oct 30 13:06:10 CET 2018 For more details, see the log file /Users/jaime/vallecas/data/uma/Subject_UMA_0018/UIPA11REV/003_SAG_3D_IR//sujeto_uno/scripts/hippocampal-subfields-T1.log -- Jaime Gomez-Rami

Re: [Freesurfer] Matlab Segmentation error when running hippocampal segmentation in dev version

2018-11-05 Thread Jaime Gomez
> /E > > > > -- > > Juan Eugenio Iglesias > > Centre for Medical Image Computing (CMIC) > > Department of Medical Physics and Biomedical Engineering > > University College London > > http://www.jeiglesias.com > > > > > > > > *From: *

[Freesurfer] recon_all subcortical volume adjuested eTIV

2021-04-19 Thread Jaime Gomez
External Email - Use Caution Hi, Does the asegs.stats produced by recon_all have the volume estimates of subcortical structures adjusted by the eTIV? I want to understand the effect of sex in the segmented structures. Should normalize the volumes of aseg.stats (Vol/eTIV) or is alr

Re: [Freesurfer] recon_all subcortical volume adjuested eTIV

2021-04-19 Thread Jaime Gomez
ing asegstats2table, you can have it > perform the correction by adding --etiv to the command line > > On 4/19/2021 7:41 AM, Jaime Gomez wrote: > > External Email - Use Caution > > Hi, > > Does the asegs.stats produced by recon_all have the volume estimates of > subcortica