[Freesurfer] How to obtain sulcal depth in raw mm?

2018-07-19 Thread Jacob Miller
sulcal depth. Is this correct? Namely, I'm wondering the best way to obtain vertex-wise values for *raw sulcal depth (**mm)* from a subject's Freesurfer (recon-all) output. Perhaps this may just entail un-standardizing the .sulc values? Thank you! Jacob -- Jacob Miller Gradua

[Freesurfer] Selecting vertices on label boundary for analysis

2018-07-23 Thread Jacob Miller
lysis that would only involve these boundary vertices (calculating the max distance between boundary vertices in a label, as a measure of label length). Thanks again! Jacob -- Jacob Miller Graduate Student, D'Esposito Lab Helen Wills Neuroscience Institute (HWNI) University of California

[Freesurfer] Avoiding or removing overlap when converting surface labels to volume

2019-08-08 Thread Jacob Miller
this as part of the surface-to-volume transform. Thanks so much! Jacob -- Jacob Miller Graduate Student, D'Esposito Lab Helen Wills Neuroscience Institute (HWNI) University of California, Berkeley https://despolab.berkeley.edu/ ___ Freesurfer ma