[Freesurfer] what is mri_cvs_register.settings.txt?

2012-04-19 Thread Jackie Leung
Hi, I'm new to Freesurfer, so this may be a silly question. I would like to run mri_cvs_register, but I decided to run mri_cvs_check first to make sure I have all the files. This is the message I received: FreeSurfer:/mridata/fs_analysis> mri_cvs_check --mov sub26 --template sub47 The following

[Freesurfer] mri_cvs_register error in step 2

2012-04-19 Thread Jackie Leung
hi, I'm trying to run mri_cvs_register and I'm getting a strange error message. MRISread(CVS_test_26to47_1/lh.resample.white): could not open file No such file or directory Error reading surface CVS_test_26to47_1/lh.resample.white I've checked the directory and the file definitely exists. It s

Re: [Freesurfer] mri_cvs_register error in step 2

2012-04-19 Thread Jackie Leung
tach the log file? > > Thanks, Lilla > > > On Thu, 19 Apr 2012, Jackie Leung wrote: > > hi, >> >> I'm trying to run mri_cvs_register and I'm getting a strange error >> message. >> >> MRISread(CVS_test_26to47_1/lh.**resample.whit

Re: [Freesurfer] mri_cvs_register error in step 2

2012-04-20 Thread Jackie Leung
> regenerated. > > --Lilla > > > On Thu, 19 Apr 2012, Jackie Leung wrote: > > ok... please see attached. >> >> note: The directory name is different in this log file, but the error is >> the same. I've been testing this problem with many different d

Re: [Freesurfer] mri_cvs_register error in step 2

2012-04-23 Thread Jackie Leung
hi Lilla, I ended up with the same error... so I'm not sure what else to try. Do you have an ideas for troubleshooting? I've also attached the latest log file, although it's probably very similar to the first one. thanks, jackie On Fri, Apr 20, 2012 at 6:10 PM, Jackie Le