[Freesurfer] [freesurfer] installation

2010-08-18 Thread Ignacio Letelier
Hi all I'm a new freesurfer user and I have some troubles installing the program. after moving to cd /usr/local I typed *freesurfer-virtual:~>* tar xzvf freesurfer-Linux---full.tar.gz replacing - with freesurfer-Linux-centos4-stable-pub-v4.3.1 I get the following error message Cannot >>

[Freesurfer] Fwd: [freesurfer] installation

2010-08-18 Thread Ignacio Letelier
Sorry Doug I forgot to send the entire email thread. Now, could you please help me with the installation. Best regards. Forwarded conversation Subject: [freesurfer] installation From: *Ignacio Letelier* Date: 2010/8/18 To: freesurfer@nmr.mgh.harvard.edu Hi all I&#

[Freesurfer] Thickness measurements stats

2011-07-01 Thread Ignacio Letelier
Hi forum Is it possible to get statistical maps of cortical thickness differences in the same subject? I.e. to know what areas differ most from the median -- Ignacio ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harv

Re: [Freesurfer] Thickness measurements stats

2011-07-01 Thread Ignacio Letelier
deep blue = lower deviations)? So this way I can determine where there may exist some kind of dysplasia. Best regards. 2011/7/1 Bruce Fischl > can you post this kind of thing so others can answer? I still don't > understand though. stdv of what? > > > On Fri, 1 Jul 2011, Ignacio

Re: [Freesurfer] Thickness measurements stats

2011-07-05 Thread Ignacio Letelier
s such as sequence type, > field strength and acquisition parameters (not to mention age, maybe gender, > etc...) so I think you need to acquire your own control(s) on a matched > acquisition. > > cheers. > Bruce > > > On Tue, 5 Jul 2011, Ignacio Letelier wrote: > > Hi

[Freesurfer] QDEC : Error loading the data table.

2011-07-06 Thread Ignacio Letelier
Hi I have recently tried to create a new table and I received the following message after loading it in QDEC: Loading data table /home/virtualuser/apps/freesurfer/subjects/qdec.table.dat... Number of columns: 5 fsid column:1 Number of factors: 4 Number of subjects: 10 ERROR3: QdecDataT

[Freesurfer] QDEC table

2011-07-07 Thread Ignacio Letelier
Hi freesurfers Do anyone know if it's possible to automatically enter in the QDEC table the gray matter volume of every subject in the study, to avoid entering this item manually for each one ? Best regards. -- Ignacio. ___ Freesurfer mailing list Fre

[Freesurfer] tkregister2

2011-07-12 Thread Ignacio Letelier
Hi freesurefers I tried to visualize my functional data using the command: tkregister2 --s --reg --fslreg --surf orig --tag and i received this error : ERROR: trying to convert FSL registration matrix to FreeSurfer, but FSLOUTPUTTYPE variable is not set. Can anyone help me with this , Than