[Freesurfer] surfreg cannot allocate memory

2018-12-19 Thread Haoran Xu
4-stable-pub-v6.0.0-2beb96c. 2) Platform: UBUNTU 16.04 LTS with 23.5GB memory and 1.4TB available space. (With this, 1.7G should be fine.) 3) uname -a: Linux haoranPC 4.15.0-43-generic #46~16.04.1-Ubuntu SMP Fri Dec 7 13:31:08 UTC 2018 x86_64 x86_64 x86_64

Re: [Freesurfer] surfreg cannot allocate memory

2018-12-20 Thread Haoran Xu
(seconds, -t) unlimited > max user processes (-u) 256605 > virtual memory (kbytes, -v) unlimited > file locks (-x) unlimited > > If memory does not read as unlimited then, > > $ ulimit -m unlimited > > - R. > > > On Dec

Re: [Freesurfer] surfreg cannot allocate memory

2018-12-20 Thread Haoran Xu
hat error is the hallmark of a corrupted volume file. Do you > mind sending the log, or at least the end of it? It’d be helpful to see > when this error is actually occurring. > > > > thanks > > Andrew > > > > > > *From: * on behalf of Haoran Xu < >

Re: [Freesurfer] surfreg cannot allocate memory

2018-12-20 Thread Haoran Xu
in.mgz in freeview > without getting this error? > Andrew > > > From: on behalf of Haoran Xu > > Reply-To: FS Help > Date: Thursday, December 20, 2018 at 2:33 PM > To: FS Help > Subject: Re: [Freesurfer] surfreg cannot allocate memory > > Extern