[Freesurfer] glmfit with aseg table: view surface overlay

2021-04-13 Thread Griem, Julia
External Email - Use Caution Dear Freesurfer team, I am comparing subcortical volumes (aseg table) in 2 groups with no other variables. Based on the GLM lecture slides from the course I attended, I ran the following glmfit command: mri_glmfit --table aseg_table.txt --fsgd FSGD/D

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-15 Thread Griem, Julia
so the output is a table (the sig.mgh file will just have the number of values that are in the table; this is not a "volume" you can look at in FV). Look in the sig.table.dat file for the sigs. On 4/13/2021 8:41 AM, Griem, Julia wrote: External Email - Use Caution Exter

Re: [Freesurfer] glmfit with aseg table: view surface overlay

2021-04-16 Thread Griem, Julia
s) or with FDR. On 4/15/2021 11:13 AM, Griem, Julia wrote: External Email - Use Caution External Email - Use Caution Hi Doug, Thank you. Makes sense. Is there any way to visualize significance overlays for the subcortical volumes? I've also moved on to the correction fo