[Freesurfer] fcseed-sess problem

I've completed steps 1 thru 4 successfully (i think). When I run the fcseed-sess with the segid for the left insula I'm getting an segmentation fault. I've tried both segids 7 and 19 and have the same result. Selecting other seed regions (left posterior cingulate) generates a 1d file timeco

Re: [Freesurfer] fcseed-sess problem

uglas N Greve wrote: Hi Chaz, we'll need more info. Please see surfer.nmr.mgh.harvard.edu/fswiki/BugReporting On 08/11/2015 11:40 PM, Gay,Charles Wysaw wrote: I've completed steps 1 thru 4 successfully (i think). When I run the fcseed-sess with the segid for the left insula

Re: [Freesurfer] fcseed-sess problem

you > want > is actually 1035. > > doug > > > On 08/12/2015 11:09 AM, Gay,Charles Wysaw wrote: >> Hi Doug - >> Here is some of the information: >> FREESURFER_HOME: >> /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/freesurfer >> >> Bu

[Freesurfer] fast_selxavg3 ( ) failed\n

Hi - I've encountered an error in step 8 of the functional connectivity analysis. here is some of the information requested with errors: FREESURFER_HOME: /Volumes/projects/painimaging/Bishop/FreeSurfer_R01/freesurfer Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0 Kernel info: Darwin 14.

Re: [Freesurfer] fast_selxavg3 ( ) failed\n

led? If so, is it in your path? > > On 8/18/15 4:54 PM, Gay,Charles Wysaw wrote: >> Hi - >> I've encountered an error in step 8 of the functional connectivity >> analysis. >> >> here is some of the information requested with errors: >> FREESURFER

[Freesurfer] preproc-sess and stc question

Hi - 1) I am trying to perform preprocessing steps on functional task data that was acquired on a Phillips scanner using an interleaved acquisition. There are 42 slices and the order is [0,6,12,18,24,30,36,1,7,13,19,25,31,37,2,8,14,20,26,32,38,3,9,15,21,27,33,39,4,10,16,22,28,34,40,5,11,17,23,2

[Freesurfer] mri_glmfit fsgd and matrix problems

Hi Freesurfer group - I am receiving errors each time I try to run mri_glmfit. It appears to be the way I set up either the fsgd or mtx file. Any assistance would be greatly appreciated. Thanks, Chaz Hypothesis for the contrast in the mtx file: Is there an average affect of heat threshold regr

[Freesurfer] Error viewing uncorrected sign map with freeview

Dear Freesurfer group - I am receiving the following error when I try view results of a mri_glmfit. Any assistance would be greatly appreciated. Thanks, Chaz freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=lh.gender_worstpain_age.glmdir/worstpain/s