[Freesurfer] MRI watershed error

2024-06-20 Thread Gaurav Ambwani
SKTOP-HV9KQQ6 5.10.16.3-microsoft-standard-WSL2 #1 SMP Fri Apr 2 22:23:49 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Distributor ID: Ubuntu Description:Ubuntu 22.04.4 LTS Release:22.04 Codename: jammy I am using a WSL in windows 11 (64 bit) Thank you, Best Wishes, Gaurav Ambwani.

Re: [Freesurfer] Calculating intensity of Individual voxel

2024-06-21 Thread Gaurav Ambwani
jammy I am using a WSL in windows 11 (64 bit) Thank you, Best Wishes, Gaurav Ambwani. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Huang, Yujing Sent: Friday, June 21, 2024 7:46 AM To: Freesurfer support list Subject: Re: [Freesurfer] Calculating

Re: [Freesurfer] MRI watershed error

2024-06-25 Thread Gaurav Ambwani
's T1 weighted image. Using the I want the aseg, aparc, etc. files to be derived from the MNI_freesurfer_T1.nii.gz image. And for some reason it isn't working. I hope that this clarifies what I was trying to do. Thank you, Best Wishes, Gaurav Ambwani. F

Re: [Freesurfer] Calculating intensity of Individual voxel

2024-06-25 Thread Gaurav Ambwani
: [Freesurfer] Calculating intensity of Individual voxel I don't think she was responding to your question but rather to that of Ernest On 6/21/2024 1:23 PM, Gaurav Ambwani wrote: External Email - Use Caution Dear Yujing, I don't think that this was my question. Here are the contents

Re: [Freesurfer] MRI watershed error

2024-06-25 Thread Gaurav Ambwani
MRI. Since I am trying to register the T1 MNI image to the patient MRI. Could I do the skull stripping and registration and then individually run the autorecon2, autorecon2-cp, autorecon-wm etc. steps subsequently in order. Do you think that this would be feasible. Thank you, Best Wishes, Gaur

Re: [Freesurfer] MRI watershed error

2024-06-25 Thread Gaurav Ambwani
regarding this too. If you have a workaround based on my previous emails please do let me know. Thank you, Best Wishes, Gaurav Ambwani. From: Gaurav Ambwani Sent: Tuesday, June 25, 2024 5:30 PM To: Freesurfer support list Subject: Re: [Freesurfer] MRI watershed

Re: [Freesurfer] MRI watershed error

2024-06-26 Thread Gaurav Ambwani
hen I take the skull stripped image as my reference image and input the T1 MNI image, the registration isn't successful, i.e. the image seems warped. Thank you, Best Wishes, Gaurav Ambwani. From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N. Gr

Re: [Freesurfer] MRI watershed error

2024-06-26 Thread Gaurav Ambwani
External Email - Use Caution Dear Freesurfer team, In short I just wanted to know if it would be possible for me to put a skull stripped MRI into freesurfer for recon-all? Thank you, Best Wishes, Gaurav Ambwani. From: Gaurav Ambwani Sent