[Freesurfer] Problems with Auto Reconall

2006-06-01 Thread Frederick Powell
using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 1.117 0.005 0.077 -0.516; -0.015 1.062 0.148 -22.126; -0.084 -0.173 1.230 -34.192; 0.000 0.000 0.000 1.000; INFO: Modifying talairach volume c_(r,a,s) based on average_3

[Freesurfer] Recon error

2006-06-01 Thread Frederick Powell
gunzip: /Users/frederickpowell/freesurfer/subjects/011106RJ/nu.mgz.gz: No such file or directory mghRead(/Users/frederickpowell/freesurfer/subjects/011106RJ/nu.mgz, -1): read error I went into my subjects directory and to the subject that I ran with the error and received the above. -- Frederick

[Freesurfer] Freesurfer and FSL integration

2007-04-03 Thread Frederick Powell
I would like to run FSL and Freesurfer on my Linux compter. I have noticed that within Freesurfer I have a FSL directory. I have also visited the FSL website and noticed an entire downloadable version of FSL. I would like to be able to use my structural MPRAGE images that I have analyzed in Fre

[Freesurfer] Recon All

2006-03-13 Thread Frederick Powell
Hello all, I am new to Freesurfer and would like to know what is the new command to perform the automated process for this software. I have created a subject directory and my files are dicom. If anyone could please give me as much information because I just started to use this and I am running X1

[Freesurfer] Nu_correct error

2006-04-05 Thread Frederick Powell
Hello I am a Grad student with Dr. Killiany at Boston University. I am running auto recon with a Linux Centos machine. So I am running the auto recon on his system while controlling from my mac machine. I recieved the following error. I am not Linux savy so will need some detailed help. Thanks