Re: [Freesurfer] How can I create a grey matter volume in Matlab?

2020-06-08 Thread Franziska Klein
sufficient. Any thoughts or ideas maybe? Thanks, Franziska Von: Franziska Klein Gesendet: Mittwoch, 27. Mai 2020 11:05 An: freesurfer@nmr.mgh.harvard.edu Betreff: How can I create a grey matter volume in Matlab? Dear freesurfer user, due to the Covid 19

Re: [Freesurfer] How can I create a grey matter volume in Matlab?

2020-06-08 Thread Franziska Klein
tween white and pial surfaces. This is already done in the ribbon.mgz file On 6/8/2020 10:05 AM, Franziska Klein wrote: External Email - Use Caution Hello again, unfortunately, nobody is responding. . Until now I am able to create meshes from the freesurfer output files with the i

[Freesurfer] Question regarding MRIread

2020-06-26 Thread Franziska Klein
External Email - Use Caution Hello, I am using the isosurface() function in order to create a mesh based on the T1.mgz and on the ribbon.mgz. I need those meshes for the coregistration of some channels. After coregistration I do project the channels onto the cortex and extrac

Re: [Freesurfer] Question regarding MRIread

2020-06-29 Thread Franziska Klein
it sounds like you might not be taking into account that the voxel coords in matlab are 1-based. On 6/26/2020 12:04 PM, Franziska Klein wrote: External Email - Use Caution Hello, I am using the isosurface() function in order to create a mesh based on the T1.mgz and on the ribbon.mgz. I

Re: [Freesurfer] Question regarding MRIread

2020-06-29 Thread Franziska Klein
urfer] Question regarding MRIread How did you generate the nii file from the mesh? On 6/29/2020 12:21 PM, Franziska Klein wrote: External Email - Use Caution I know, a lot of steps. 1-based vs. 0-based, that is basically what I mean and what I think is the problem, but I need to be sure. W

Re: [Freesurfer] Question regarding MRIread

2020-06-29 Thread Franziska Klein
External Email - Use Caution Sorry. I am not using the mesh for this, but the volume. Von: Franziska Klein Gesendet: Montag, 29. Juni 2020 19:15:01 An: freesurfer@nmr.mgh.harvard.edu Betreff: AW: [Freesurfer] Question regarding MRIread I've

Re: [Freesurfer] Question regarding MRIread

2020-06-29 Thread Franziska Klein
ntag, 29. Juni 2020 20:08:04 An: freesurfer@nmr.mgh.harvard.edu Betreff: Re: [Freesurfer] Question regarding MRIread what volume? how did you create it? please give some details On 6/29/2020 1:19 PM, Franziska Klein wrote: External Email - Use Caution Sorry. I am not using the mesh