[Freesurfer] hippocampal subfields

Kind regards, Ferdi van de Kamp # #@# Longitudinal Hippocampal Subfields processing (T1) left Wed Jan 4 03:06:40 CET 2017 -- Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/Freesurfer/f

[Freesurfer] Hippocampal subfields huge memory demands

Hi all, sorry for the double post, but I noticed an error in the chosen title. I believe the website warns for high demands of memory, claiming it may take up to 10G for this processing step. However, when I run this on cluster the memory demands go up to 30G. This is still for one subject using

[Freesurfer] Parahippocampal subfields huge memory demands

Hi all, I believe the website warns for high demands of memory, claiming it may take up to 10G for this processing step. However, when I run this on cluster the memory demands go up to 30G. This is still for one subject using one scan. Is this to be expected, has something changed in the processin

Re: [Freesurfer] Parahippocampal subfields huge memory demands

Hi Eugenio, I've been trying figure out what is going on and part of the problem seems to be a buggy scheduler, which cannot be remedied at the moment. E.g. 64G maxvmem is reached in one subject within 12 seconds (when running a batch of over 100 participants). Running it again later (in a very sm

[Freesurfer] Mri_segstats on longitudinal data (NVoxels)

This is the part that is submit to the cluster for each subject (separate for cross-sectional and longitudinal). It uses *mri_label2label*, *mri_label2vol *and *mri_segstats*. Thanks! Ferdi van de Kamp ___ Freesurfer mailing list Freesurfer@nmr.mgh.har