[Freesurfer] flip4fsl missing in stable6

2017-01-31 Thread Fan, Qiuyun
Hi FreeSurfer experts, I figured 'flip4fsl' is missing from /usr/local/freesurfer/stable6/bin/. Can someone help to make a copy from /usr/local/freesurfer/stable5_3_0/bin/flip4fsl, if possible? Thanks a lot! Best, Qiuyun ___ Freesurfer mailing list

[Freesurfer] mni152reg

2014-07-30 Thread Fan, Qiuyun
Hi Freesurfer experts, I was trying to align T1 image to MNI space by running 'mni152reg --s ', and got the following error messages: mkdir: cannot create directory `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.5197': Permission denied ... niiWrite(): error opening file

[Freesurfer] unpacking error

2014-12-05 Thread Fan, Qiuyun
Dear Freesurfer expert, I come across an error message when calling 'unpacksdcmdir' to unpack the data that's been pushed to Bourget. I have no trouble navigate to the directory on /cluster/archive and see the files are there, but just could not have the 'unpacksdcmdir' work. Here are the