[Freesurfer] Recon Error

2017-06-06 Thread Emily Rogers
Hello, I am trying to implement using Freesurfer segmentation in my analysis for MEG data. I am trying to segment this structural MRI (1400composite.dcm) and I keep getting errors. I have attached the log file. Any help is appreciated. Thank you, Emily Emily E. Rogers, MSc Wake Forest Graduat

[Freesurfer] (no subject)

2017-06-06 Thread Emily Rogers
Apologies-- This email contains attachment. Thank you. Hello, I am trying to implement using Freesurfer segmentation in my analysis for MEG data. I am trying to segment this structural MRI (1400composite.dcm) and I keep getting errors. I hav

Re: [Freesurfer] (no subject)

2017-06-06 Thread Emily Rogers
even recognizing it as a dicom. Where did it come from and what is in it? On 06/06/2017 04:35 PM, Emily Rogers wrote: > Apologies-- This email contains attachment. Thank you. > > > > Hello, > > I am trying to implement using Fre

Re: [Freesurfer] (no subject)

2017-06-07 Thread Emily Rogers
to recon-all On 06/06/2017 05:14 PM, Emily Rogers wrote: > Yes I have the original 160 files, attached. > > Thanks for your help, > Emily > > > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.

Re: [Freesurfer] (no subject)

2017-06-07 Thread Emily Rogers
file for input into Freesurfer. You may be able to skip the Osirix step with what you have. Anthony On 6/7/17, 11:26 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Emily Rogers" wrote: Do you have any recommendations for programs to convert to a single DICOM file? It seems tha

Re: [Freesurfer] (no subject)

2017-06-07 Thread Emily Rogers
cheers Bruce On Wed, 7 Jun 2017, Emily Rogers wrote: > I apologize, I am new to linux and programming through the terminal. Would > this need to be done prior to the recon command? > > If my command is: "recon-all -i 00015DCM.dcm -s summer2 -all" > > with that being the f