the Tracula config file:
*Step7.3: Specifying Number Of low-b Images* The last step to set up if not
using original DICOMs would be to specify the number of low-b images with
the following variable:
set nb0 = *No. of low-b images*
Thank you in advance for your help.
Cheers,
Deryk
Deryk S. Beal
the Tracula config file:
*Step7.3: Specifying Number Of low-b Images* The last step to set up if not
using original DICOMs would be to specify the number of low-b images with
the following variable:
set nb0 = *No. of low-b images*
Thank you in advance for your help.
Cheers,
Deryk
Deryk S. Beal
Sorry for the confusion!
>
> a.y
>
>
> On Fri, 10 Jun 2011, Deryk S. Beal, Ph.D. wrote:
>
> Dear Tracula Users
>>
>> Does Tracula assume that the number of B0 scans, specified in Step 7.3 of
>> the config file tutorial (below), are the first X number of volumes
in = 200
# Number of MCMC iterations
# (Path samples drawn by MCMC algorithm and used to estimate path
distribution)
# Default: 5000
#
set nsample = 5000
# Frequency with which MCMC path samples are retained for path distribution
# Default: 5 (keep every 5th sample)
#
set nkeep = 5
Deryk
, more weight means less secondary fibres per voxel, default
1)
-b (burnin period, default 1000)
-j (number of jumps, default 1250)
-s (sample every, default 25)
Deryk S. Beal, Ph.D., CCC-SLP, S-LP(C), Reg. CASLPO
Speech-Language
Hi Priti
In addition, if I run bedpostx from the command line as follows:
bedpostx /usr/local/freesurfer/subjects/C001/dmri
it works just fine without errors.
Deryk
Deryk S. Beal, Ph.D., CCC-SLP, S-LP(C), Reg. CASLPO
Speech-Language Pathologist
C.I.H.R. Post Doctoral Research Fellow
