[Freesurfer] question about the ribbon

I had a case which did not estimate the white matter clearly . So i used tkmedit to add the voxels to the wm.mgz. After running program using autorecon2-wm the new surfaces were created , but the  ribbon.mgz was not . Shouldn't the ribbon update too , because it shows the thickness of gm.

[Freesurfer] Need Help with one dataset

I have one MRI and I run freesurfer on it . It runs through completely . When I see the output though , the surface does not include a huge part of the temporal lobe. I looked at the brain mask, and the deskulling is perfect. But the wm.mgz does not include temporal regions and hence the surface

[Freesurfer] Error during recon-all with notal-check on

I have a MRI data which has a lesion on the left side .  recon-all fails with errors . I was hoping to recover from this error . The last few lines of the log file is as follows'___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.

Re: [Freesurfer] Error during recon-all with notal-check on

face No such file or directory Linux  recon-all -s ep183 exited with ERRORS at Wed Oct 10 21:07:00 EDT 2012 Sorry for the multiple emails REgards Dp From: Darshan P To: "freesurfer@nmr.mgh.harvard.edu" Sent: Wednesday, October 31, 2012 12:50

[Freesurfer] OBJ conversion

Hello all, I was wondering if I can convert the surface outputs to an OBJ mesh file format .  Since most of the applications are in windows I was hoping if there is conversion tool to do this . Regards Darshan___ Freesurfer mailing list Freesurfer@nmr

[Freesurfer] Running FS on deskulled dataset

I have an MRI volume dataset, which is deskulled beforehand .  Is it possible to run recon-all with an option stating to not deskull the data.  Regards Darshan___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mai