[Freesurfer] analyses of single trials

2007-08-09 Thread Dara Manoach
Hi, Is it possible, with existing software, to extract signal changes at vertices, voxels, or ROIs for single trials, rather than across trials? This would allow an examination of intra-subject variability in BOLD response, habituation effects, etc... Something like this was done by: Ya

[Freesurfer] procedural question about FDR correction

2007-08-16 Thread Dara Manoach
Hi, FDR correction for multiple comparisons gives you different p-values for the left and right hemispheres. It seems really weird to report in a paper: a) that you've corrected for the right and left hemispheres separately and b) that the p-value that gave rise to a corrected probability o

[Freesurfer] anatomical weirdness?

2007-09-28 Thread Dara Manoach
Greetings, Is the subcollosal gyrus included in the ACC label from the cortical parcellation of Fischl, 2004? We are using the ACC label to constrain Monte Carlo simulations to the ACC. A max vertex for an ACC cluster has the annotation G_subcollosal, but is listed in the ROI-constrained

[Freesurfer] annotation file and labels for fsaverage

2008-09-08 Thread Dara Manoach
Greetings, We are using fsaverage as the template for overlaying our group fMRI data. Which annotation file should we use for designating ROIs? There seem to be two options: lh.aparc.a2005s.annot and lh.aparc.annot. And which atlas is each annotation file derived from? Thank you, Dara D

Re: [Freesurfer] annotation file and labels for fsaverage

2008-09-08 Thread Dara Manoach
Thanks very much for the detailed info Karl (and Doug and Bruce)! My primary ROI is ACC, so we'll probably use Aparc with the cingulate divisions. I'll have to review the paper to see if the anatomic bases of the divisions are described. I'm surprised, though, that there is not an insula lab