[Freesurfer] label file from freesurfer 5.3

Dear FreeSurfer experts, When I tried to use FreeSurfer 6.0.0’s freeview to open a label file generated by FreeSurfer 5.3, I could not see anything. Is it incompatibility issue going on here? Thanks, Daniel ___ Freesurfer mailing list Freesurfer@nmr

Re: [Freesurfer] label file from freesurfer 5.3

Good to know, then, it must be the way I interact with FS 6.0.0 that is wrong. It’s a surface label. Can I send you the label file to see if you could view that in FS 6.0.0’s freeview using command line? -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental

Re: [Freesurfer] label file from freesurfer 5.3

Thank you. I just sent it to your mailbox. -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Health System E-mail: daniely...@gwu.edu <mailto:daniely...@gwu.edu> > On May 31,

Re: [Freesurfer] label file from freesurfer 5.3

Thanks, Bruce! It works now. Is it possible I can convert all the negative values in the label to something like 1? Best, Daniel -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National

Re: [Freesurfer] label file from freesurfer 5.3

Thank you so much for your help! -- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Health System E-mail: daniely...@gwu.edu <mailto:daniely...@gwu.edu> > On May 31, 2017, a

[Freesurfer] fwhm in area analysis

Hi FreeSurfer experts, When I specify fwhm=15 to analyze area, mri_surfcluster said that it cannot find fwhm31 in fsaverage/${hemi}/cortex/fwhm31/... This did not happen when I used FreeSurfer 5.3.0 I am wondering if FreeSurfer 6.0.0 pre-smooths the surface area? Thanks, Daniel

Re: [Freesurfer] fwhm in area analysis

Hi FreeSurfer experts, I am wondering if I use fwhm=15 to analyze area, mri_surfcluster reported that it cannot find fwhm31 in fsaverage/${hemi}/cortex/fwhm31/... is this normal? When I use fwhm=10, everything seems to be okay. Best, Daniel On Tue, Sep 26, 2017 at 8:57 PM, Daniel Yang wrote

Re: [Freesurfer] fwhm in area analysis

at 8:57 PM, Daniel Yang wrote: > Hi FreeSurfer experts, > > When I specify fwhm=15 to analyze area, mri_surfcluster said that it > cannot find fwhm31 in fsaverage/${hemi}/cortex/fwhm31/... > > This did not happen when I used FreeSurfer 5.3.0 > > I am wondering if FreeSurf