in a voxel if that voxel is
> labeled as ribbon in the ribbon.mgz file. The --fill-ribbon is probably
> going to be more accurate (which seems to be the case in the images you
> sent). does that make sense?
>
> On 4/16/19 4:54 PM, Caroline Chwiesko wrote:
> >
> >
el be within the surface. --annot will determine that the voxel will
> be inside the surface even if the surface just nicks it.
>
> On 4/16/19 6:58 PM, Caroline Chwiesko wrote:
> >
> > External Email - Use Caution
> >
> > Could you explain a little more wha
External Email - Use Caution
Hello Freesurfer developers,
this is just a quick question:
where/with what function can I get all the label values that are included
in lh.hippoSfLabels-T1.v10.FSvoxelSpace.mgz and
rh.hippoSfLabels-T1.v10.FSvoxelSpace.mgz
I want to replace the HIP l
> >
> >
> > On 8/6/19 6:42 PM, Greve, Douglas N.,Ph.D. wrote:
> >> You should edit the wm.mgz. In these places, the WM will be labeled as
> >> non-WM. Just erase the mislabeled voxels.
> >>
> >> On 8/6/19 6:31 PM, Caroline Chwiesko wrote:
are
> included in the ?h.white surface and should not be we can suggest some
> things to try. Or tar and gzip the whole subject dir and ftp it to us and
> send us some voxel coords of places you think things should be more
> accurate.
>
> cheers
> Bruce
>
> On
External Email - Use Caution
Dear Freesurfer team,
when checking the output after recon-all i am having the issue that the
white matter surface extends too much into the cortex. I observe this in
most of my subjects (mostly in the posterior part of the brain) so it seems
to be a s
External Email - Use Caution
Hello Freesurfer experts,
i am doing some editing after recon-all. I have the issue that one gyrus is
not captured by the pial surface. There is no wm that is wrong and that i
could correct. It looks like this gyrus has a weird angle so there is
actua
s, I guess send along images using all 3 orientations. There has to be
> some white matter there somewhere….
>
> Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Caroline Chwie
reminder to make sure it won't be forgotten ;)
Thank you very much for any help!
Cheers
Carolin
On Fri, Mar 19, 2021 at 4:54 PM Caroline Chwiesko wrote:
> Hi Bruce,
> thank you very much for taking a look at that. I uploaded 3 images in
> different orientations. I can not see an
> Hi Carolin
>
>
>
> Where did you upload the images?
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Caroline Chwiesko
> *Sent:* Friday, March 26, 2021 6:08 PM
> *To:* Freesurfer supp
directory
>
>
>
> Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Caroline Chwiesko
> *Sent:* Friday, March 26, 2021 8:04 PM
> *To:* Freesurfer support list
> *Subject:* Re: [
*From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Caroline Chwiesko
> *Sent:* Monday, March 29, 2021 5:54 PM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer] How to edit GM when WM is ok
>
>
Mon, Mar 29, 2021 at 3:32 PM Caroline Chwiesko wrote:
> RAS: 6.11, 57.54, 60.36
> brainmask [120, 98, 191]
> Talairach 115.59, 127.61, 202.35
>
> On Mon, Mar 29, 2021 at 3:08 PM Fischl, Bruce
> wrote:
>
>> Thanks. What are the voxel coords of the location you wan
External Email - Use Caution
Hello Bruce,
I haven't heard back from you so I just wanted to follow up and ask if you
had the chance to look at the data that I uploaded.
Cheers
Carolin
On Mon, Mar 29, 2021 at 4:01 PM Caroline Chwiesko wrote:
> Because the dataset is
gt;
>
> Cheers
>
> Bruce
>
>
>
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Caroline Chwiesko
> *Sent:* Thursday, April 8, 2021 3:52 PM
> *To:* Freesurfer support list
> *Subject:* Re: [Freesurfer]
15 matches
Mail list logo
