[Freesurfer] Can we use fressurfer 6 with the Human connectome project's pipeline ?

Dear freesurfer experts, I'm wondering if it's possible to run the human connetome project's minimal processing pipeline using freesurfer 6 ? Does it require some update of the pipeline or is there anybody that have already enjoyed the new freesurfer version with this pipeline ? Thank you f

Re: [Freesurfer] Can we use fressurfer 6 with the Human connectome project's pipeline ?

;> placement goes and there are also some adaptations we need to make to >>the >> pipelines. >> >> Peace, >> >> Matt. >> >> From: on behalf of CAGNA >>Bastien >> >> Reply-To: Freesurfer support list >> Date: Monday, March 13

[Freesurfer] Resampling a gifti image to nifti using mri_surf2vol fails

External Email - Use Caution Hi everyone, I need to convert a surfacic mask that is made from data of one subject projected onto fsaverage6 into a volumic map. To do so, I'm trying to use mri_surf2vol to take my Gifti file and create 3D version as Nifti file (using gray matter).

Re: [Freesurfer] Resampling a gifti image to nifti using mri_surf2vol fails

External Email - Use Caution Hi, First I tried to use my original mask which is a gifti with a single darray as NIFTI_INTENT_ESTIMATE that contains 0 or 1 for each vertex. But I got it: " ** DA[0] has coordsys with intent NIFTI_INTENT_ESTIMATE (should be NIFTI_INTENT_POINTSET