the bval and bvec files.
On 07/29/2013 11:17 AM, Borsodi Florian wrote:
Hello,
I have been trying to run tracula on my data and i keep getting the
same kind of error repeatedly.
For my imput I am u
times.
a.y
On Mon, 29 Jul 2013, Borsodi Florian wrote:
> Hello,
>
> I have been trying to run tracula on my data and i keep getting the same
> kind of error repeatedly.
> For my imput I am using dicoms from a Siemens scanner with a stadard
> diffusion protocol. However, tracula c
that bedpostx reconstructs (and is used by
> tracula). Your scan time is better spent acquiring 48 different
> directions, rather than the same 6 directions 8 times.
>
> a.y
>
> On Mon, 29 Jul 2013, Borsodi Florian wrote:
>
> > Hello,
> >
> > I have
Hi Anastasia,
Here are the bvec and bval files you asked me about.
Sincerely,
Florian
>>> Anastasia Yendiki 18.08.13 22.52 Uhr >>>
Hi Florian - Can you please also attach the bvecs/bvals files from the
dmri directory?
Thanks,
a.y
On Sun, 18 Aug 2013, Borsodi Fl
gt; Hi Florian - Can you please also attach the bvecs/bvals files from the
> dmri directory?
>
> Thanks,
> a.y
>
> On Sun, 18 Aug 2013, Borsodi Florian wrote:
>
> > Hi Anastasia,
> >
> > Thanks for your help. I renamed the directories and reran trac-all. It
Hi Anastasia,
Yes, i am running this on ubuntu 12.04.
Sincerely,
Florian
>>> Anastasia Yendiki 20.08.13 17.38 Uhr >>>
Hi Florian - Are you running this on an ubuntu system by any chance?
a.y
On Tue, 20 Aug 2013, Borsodi Florian wrote:
> Hi Anastasia,
>
> T
rror that has surfaced recently because in
Ubuntu /bin/sh is not a bash shell any more. To get around this, you can
edit the first line of the scripts $FREESURFER_HOME/bin/bedpostx_mgh and
$FREESURFER_HOME/bin/fsl_sub_mgh. You'll have to replace "/bin/sh" with
"/bin/bash&
ck that all the output files were created in the
dmri.bedpostX directory:
http://fsl.fmrib.ox.ac.uk/fsl/fsl4.0/fdt/fdt_bedpostx.html
a.y
On Thu, 22 Aug 2013, Borsodi Florian wrote:
> Hi Anastasia,
>
> This Ubuntu-related error is a tricky one.
> I changed the first line in th
