[Freesurfer] Thalamic nuclei segmentation

External Email - Use Caution Hi! Few weeks ago I found the thalamic nuclei segmentation tool in Freesurfer development version and I had it working fine. However, I can’t find the web page anymore with the instructions how to use the tool. Is the tool still in use and if so, wh

[Freesurfer] Thalamic nuclei longitudinal analysis

Best, Antti Cajanus PhD student ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] dt_recon error: dimension mismatch between y and X

he archive, however not finding any similar issues. Does anyone have an idea how to solve this error? Attached is the dt_recon.log.Best,Antti Cajanus dt_recon.log Description: Binary data ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard

[Freesurfer] Group comparison with MD

External Email - Use Caution Dear Freesurfer experts, I’m trying to do a group comparison of cortical mean diffusivity. The study subjects form 2 groups (demented vs. non-demented). I’ve run recon-all and dt_recon on all of my study subjects. My goal is to create a surface, tha