[Freesurfer] freeview is RAM greedy in version 7.1.0

External Email - Use Caution Dear experts, I want to use freeview for viewing Gordon surface labels on inflated surface with custom coloring. I am using commandline like freeview -viewport 3d -f $SUBJECTS_DIR/fsaverage/lh.inflated:label=L_Auditory_10.label:label_color=255,191

Re: [Freesurfer] freeview is RAM greedy in version 7.1.0

, at 2:42 PM, Antonín Škoch wrote: External Email - Use Caution Dear experts, I want to use freeview for viewing Gordon surface labels on inflated surface with custom coloring. I am using commandline like freeview -viewport 3d -f $SUBJECTS_DIR/fsaverage/lh.inflated:label

Re: [Freesurfer] eddy_correct with DTI {Disarmed}

External Email - Use Caution Hi, Wei, I would recommend to use dwifslpreproc script from mrtrix3 suite instead. https://secure-web.cisco.com/1EpWqxf1LAo_9zZza7TvgPO7braRXyCjrY1yjVepX0Quqt-Ac1b-Jn1Bh1FMt6xWVwHRFmBKER3JkEFvxatFejuIwONb_4DCvX9cyy6h5BZ1bkwko3O30atWjFN-IqfBXI0e7bQXos

[Freesurfer] Computing thickness from woT2.pial surfaces

External Email - Use Caution Dear experts, I have processed my data with -T2pial option. I would like now to also compute thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a comannd which does the trick, without running recon-all -pial (which rewrite

Re: [Freesurfer] Computing thickness from woT2.pial surfaces

don't think so...). This inconsistence makes me puzzled. Regards, Antonin Hi Antonín You can specify what surfaces to use in mris_thickness:mris_thickness -pial -white … cheers Bruce From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Antonín Škoch Sent: Wednesday, Decem

Re: [Freesurfer] Computing thickness from woT2.pial surfaces {Disarmed}

wall Bruce On Dec 9, 2020, at 11:31 PM, Antonín Škoch wrote: External Email - Use Caution Hi, Bruce, in the meantime, I found the old thread https://secure-web.cisco.com/1aNvaY2F2Wzk88I3TCWDZ8sNnAxHgbRgs7ryiKYBIUsjQEMXKVjOhDjjv-tTq_A_mcp9_w3p_xfMYU4K3oN8ts9WChKgWsA9AtPmq5FF3Y6zzmD5t03nbQ2

[Freesurfer] quantification of volume of perivascular spaces

External Email - Use Caution Dear experts, We would like to quantify volume of brain perivascular spaces. Ideally longitudinally - i.e. to study the dynamics of perivascular spaces in multiple measurement of the same subject. Is it possible to use samseg for this? Do you

Re: [Freesurfer] quantification of volume of perivascular spaces

External Email - Use Caution Dear experts, elaborating on the topics: As I read the samseg paper, I see that the flag --lesion wouldn't probably work well, since the imposed shape model, tuned for MS lesions, is not appropriate for perivascular spaces which have different shape