[Freesurfer] Conversion

2013-05-31 Thread Anna Josefson
Dear FreeSurfer users! I am new to Freesurfer, and I have succesfully managed to run recon-all on my data, for every subject. Now I plan to use the output - some of the different cortical and subcortical brain structures as ROI's in my SPM analyses. Then I would have to convert from freesurfer

[Freesurfer] Fwd: Conversion

2013-06-12 Thread Anna Josefson
-- Forwarded message -- From: Anna Josefson Date: 2013/5/31 Subject: Conversion To: freesurfer@nmr.mgh.harvard.edu Dear FreeSurfer users! I am new to Freesurfer, and I have succesfully managed to run recon-all on my data, for every subject. Now I plan to use the output - some

[Freesurfer] mri_nu_correct.mni

2013-07-10 Thread Anna Josefson
Hi list, I have been trying to test out bias correction on hi-res post mortem animal MRI data. (which is not going through regular FS analysis pipeline) Is there any option for not changing the resolution ? from mri_nu_correct.mni.log: Original Data has (0.234375, 0.234375, 0.43) mm size a