[Freesurfer] tkmeditParcColorsCMA

Dear Freesurfer, Is it possible to obtain a label image with tkmeditParcColorsCMA regions, similar to aseg+aparc.mgz or aparc.a2009s+aseg.mgz ? If so how should I proceed ? Thank you in advance. Regards, Andre Santos Ribeiro ___ Freesurfer mailing list

[Freesurfer] problem with createMorph

Dear freesurfer experts, when running the createMorph function an error of shared libraries occur. createMorph: error while loading shared libraries: libboost_program_options.so.5: cannot open shared object file: No such file or directory I searched for such shared library and although I have a

Re: [Freesurfer] problem with createMorph

ost can be > installed by typing the follwing command: > $>yum install boost-devel" > > The version of libboost that we use for our latest release is 1.41. > > I hope that helps, > > --Lilla > > > On Wed, 27 Nov 2013, André Ribeiro wrote: > > Dea

Re: [Freesurfer] Which boost version is used in CVS, mris_resample

Hi Martin, In November 27 I posted a similar question, which later I found a solution. See if it works for you. Hi Lilla, > Thank you for your reply. I have boost installed, yet it is not the > version required (v. 1.49). Although, even after installing an older > version such as the 1.41 it is n

[Freesurfer] Jacobian mri_cvs_register

Dear Freesurfer Community, How can I obtain the Jacobian of the deformation field estimated through mri_cvs_register for further use like VBM analysis? Regards, Andre Santos Ribeiro ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mai

Re: [Freesurfer] Jacobian mri_cvs_register

Thank you! Didn't realized that function existed. Regards, Andre Santos Ribeiro On Thu, Jul 10, 2014 at 4:59 PM, Lilla Zollei wrote: > > Hi Andre > > You can run: > > mri_jacobian -tm3d <3d morph> > > --Lilla > > > On Thu, 10 Jul 2014, André R

Re: [Freesurfer] Jacobian mri_cvs_register

/test_freesurfer_reg/test_jac.nii.gz Regards, Andre Santos Ribeiro PhD Student, Imperial College London On Fri, Jul 11, 2014 at 11:09 AM, André Ribeiro wrote: > Thank you! Didn't realized that function existed. > > Regards, > Andre Santos Ribeiro > > On Thu, Jul 10, 2014 at 4:59 PM

Re: [Freesurfer] Jacobian mri_cvs_register

e: > > Hi, You should use the final m3z file. The -tm3d flag just indicates that > the file was created by mri_cvs_register. > Lilla > > > On Fri, 11 Jul 2014, André Ribeiro wrote: > > I got an error using the mri_jacobina. >> The function returns: >> >&

Re: [Freesurfer] Jacobian mri_cvs_register

h we use the m3z files as we are > trying to phase out the tm3d format. > > Lilla > > > On Fri, Jul 11, 2014 at 3:11 PM, Lilla Zollei < >> lzol...@nmr.mgh.harvard.edu> wrote: >> >> Hi, You should use the final m3z file. The -tm3d flag just >>

Re: [Freesurfer] Fwd: Jacobian mri_cvs_register

ian field is computed in the coordinate space of the moving > volume so if you overlay it with brain_IBSR_01.mgz, you will see that they > match. > > We currently do not have an executbale in 5.3 that writes out the m3z > transforms in nifti format. > > > Lilla > > On Tue