[Freesurfer] Comparing between a group of subject

2016-07-15 Thread Aman Montazeri
Hi Freesurferes, Sorry for my simple and rookie question, I'm a new user and couldn't find my answer after a bit googling. I have a group of subjects and want to compare their thickness with a baseline (average of my subjects). I thought to use the mri_avarage to make the baseline (Average of al

Re: [Freesurfer] Bug in Freesurfer Installation

2016-07-15 Thread Aman Montazeri
Im not sure if its the problem or not, but seems that its the file permission error. Either do "sudo su" and re-run your command as root or change the file permissions in /subjects folder. Running commands as "root" is generally not recommended. On Jul 15, 2016 4:41 PM, "Sherryse Corrow" wrote:

[Freesurfer] GLM Analysis Number of vertices and Area

2017-07-13 Thread Aman Montazeri
Hello Friends, Sorry for the simple question. I am doing GLM analysis using QDEC between two groups (one discrete variable), then I run the Monte-Carlo clustering and got the stats of my cluster. My supervisor asked me to get the Stats of blobs/clusters (area and number of vertices in each area)