[Freesurfer] func2roi-sess w/o analysis

for this. What is the best way to extract the time series from a given ROI (e.g. rh.medialorbitofrontal) using FreeSurfer? Thanks,-- Alessandro D. Gagliardi Integrative Neuroscience Program Rutgers University Mind Brain Analysis ___ Freesurfer mailing

[Freesurfer] Re: func2roi-sess w/o analysis

Never mind. I solved my own problem using mri_vol2roi. On Fri, Jun 5, 2009 at 2:29 PM, Alessandro D. Gagliardi < ekly...@psychology.rutgers.edu> wrote: > I'd like to extract a BOLD series for a given anatomical region. It seems > like this should be possible with func2r

[Freesurfer] index out of bounds

Error in ==> fast_selxavg3 at 97 flac0 = flac_customize(flac0); >> -- ERROR: fast_selxavg3() failed\n Any help figuring this out would certainly be appreciated! Thank you, Alessandro D. Gagliardi Ph.D. Candidate Integrative Neuroscience Program

[Freesurfer] mris_ca_label: could not read surface file

ould be greatly appreciated. Alessandro D. Gagliardi Ph.D. Candidate Integrative Neuroscience Program Rutgers University Mind Brain Analysis adfgaglia...@gmail.com ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/m

Re: [Freesurfer] mris_ca_label: could not read surface file

eers > Bruce > > > On Sat, 13 Feb 2010, Alessandro D. Gagliardi wrote: > >> Dear Freesurfers, >> >> I just upgraded to the latest version of Freesurfer >> (leopard-i686-stable-pub-v4.5.0) and I want to rerun mris_ca_label to >> generate ?h.aparc.a2009

[Freesurfer] recon-all -s $subject -make all

ing some label files with mri_annotation2label. I deleted the original BRIKs, but I don't see why that would matter in this case since the orig.mgz files are still there. Is it taking so long because so much has changed between 4.3 and 4.5, or is something wrong? Thanks, Alessandro D.