External Email - Use Caution
Hi Freesurfer Developers,
I downloaded the Freesurfer tutorial data to run the TRACULA tutorial, and
encountered a number of issues:
1. When running trac-all, I get the following error:
trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutor
you downloaded?
>
> Thanks!
> a.y
> --
> *From:* freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Al Qadi, Ameen <
> ameen.alq...@icahn.mssm.edu>
> *Sent:* Tuesday, January 28, 2020 5:38 PM
> *To:* freesurfer@n
External Email - Use Caution
Dear Freesurfer Developers,
I hope this email finds you all safe and well. I have two questions
regarding the new version of freesurfer:
- Is there a new CLUT associated with FS7? I tried to use the CLUT
labels to extract thalamic subnuclei ROI
External Email - Use Caution
Dear Freesurfer Developers,
I hope this email finds you all safe and well. I have two questions
regarding the new version of freesurfer:
- Is there a new CLUT associated with FS7? I tried to use the CLUT
labels to extract thalamic subnuclei ROI
r thalamic nuclei (but not for whole thalamus). What do you think could
be the problem?
Best,
Ameen
On Fri, Jul 17, 2020 at 10:33 AM Douglas N. Greve
wrote:
>
>
> On 7/17/2020 10:25 AM, Al Qadi, Ameen wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer Developers
r thalamic nuclei (but not for whole thalamus). What do you think could
be the problem?
Best,
Ameen
On Fri, Jul 17, 2020 at 10:33 AM Douglas N. Greve
wrote:
>
>
> On 7/17/2020 10:25 AM, Al Qadi, Ameen wrote:
>
> External Email - Use Caution
>
> Dear Freesurfer Developers
u may have.
Best,
Ameen
On Tue, Jul 21, 2020 at 10:34 AM Douglas N. Greve
wrote:
> I don't know. I'm not that familiar with FSL programs. If you want our
> help, try using mri_segstats. If something goes wrong send the command line
>
> On 7/21/2020 10:26 AM, Al Qadi, Ameen w
elSpace.mgz
>
> On 7/22/2020 6:26 PM, Al Qadi, Ameen wrote:
>
> External Email - Use Caution
>
> Hi Douglas,
>
>
> mri_segstats wouldn't generate binary ROI masks, so I tried using
> *mri_binarize* and *mri_extract_label* to produce masks for thalamic
> nucl
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-- Forwarded message -
From: Al Qadi, Ameen
Date: Fri, Sep 4, 2020 at 6:09 PM
Subject: Whole Thalamus Volume
To: Freesurfer support list
Dear Freesurfer Developers,
I noticed a significant disparity in the left and right whole
