Re: [Freesurfer] mri_label2label

2024-11-15 Thread
ok at your images and the aseg.presurf.mgz segmentation and the rh.orig.nofix? The program that is throwing an error is trying to determine where the non-cortical medial wall is based on the aseg and the orig.nofix. If one or both of those are bad, then it may fail. On 11/11/2024 8:47 AM,

[Freesurfer] Questions on Using recon-all-clinical for Cortical Thickness Analysis

2024-11-26 Thread
External Email - Use Caution Hello, I have longitudinal imaging data for some participants. Due to the data collection protocol, the T1w image from the first timepoint (TP1) is a clinical sequence (e.g., slice thickness of 5mm or 6.5mm), while subsequent timepoints collected 3D