[Freesurfer] Feasibility and Accuracy of Using SAMSEG with ADC Maps

2025-04-11 Thread Taghizadeh Mortezaei, Nima
Dear FreeSurfer team, I am currently using FreeSurfer v7.4.1 and I want to ask is it feasible to run SAMSEG directly on ADC maps derived from diffusion MRI for segmenting normal brain anatomy? Alternatively, would it be more accurate to perform segmentation on a T1-weighted image and then trans

Re: [Freesurfer] trac-preproc: orientLAS and mri_info issue with unsigned shorts

2025-04-11 Thread Mirro, Amy
External Email - Use Caution Hi, Thanks again for all your work on Freesurfer. I am just following up on this earlier message. Do you guys know of any way to effectively run trac-preproc even when warning text is output by the call to mri_info? I put a more complete description

[Freesurfer] Updates/bug fixes available for the 8.0.0 release

2025-04-11 Thread fsbuild
External Email - Use Caution Some updates/bug fixes are available for an existing installation of the Freesurfer 8.0.0 release.  The list of files you can update along with a brief comment about the change(s) are: $FREESURFER_HOME/bin/csvprintScript changed to use python3 - value

Re: [Freesurfer] Updates/bug fixes available for the 8.0.0 release

2025-04-11 Thread fsbuild
External Email - Use Caution For ubuntu Linux the release string should be 8.0.0 and not 8..0.0, i.e., On Ubuntu Linux run the scripts as follows,$ sudo FREESURFER_HOME=/usr/local/freesurfer/8.0.0  bash  fs8_updates.sh On Apr 11, 2025, at 20:24, fsbuild wrote