Re: [Freesurfer] dt_recon, CC_Anterior (T1) and FA corregistration.

2025-03-26 Thread Douglas N. Greve
Have you looked at the registration directly? Eg, there will be a tkregisterfv command at the end of the register.log file. Run that. If that does not look good, then there is a registration error. Send the log file. On 2/26/2025 5:59 PM, Gonzalo Rojas Costa wrote: External Email - U

[Freesurfer] custom ROI as a reference region for PET

2025-03-26 Thread Lauri Tuominen
External Email - Use Caution Dear PETsurfers, I am trying to use PETsurfer and MRTM2 to analyze a SynVesT1 PET scan with centrum semiovale as a reference region. I have created a binary mask for centrum semiovale. I guess my issue is that I don't understand what mri_gtmpvc do

[Freesurfer] Inquiry Regarding SynthSeg Volumetric Measurements

2025-03-26 Thread ringki . siewert
External Email - Use Caution Dear FreeSurfer Developers, I am a medical student currently using FreeSurfer for my PhD research. My project focuses on measuring brain volume and performing brain segmentation in children aged 2–12 years with leukodystrophy, comparing them to healthy c

Re: [Freesurfer] Freeview

2025-03-26 Thread Wang, Ruopeng
Can you try this dev build? https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/freesurfer_ubuntu22-7-dev_amd64.deb On Mar 25, 2025, at 5:25 AM, Yoel HALIMI wrote: External Email - Use Caution It doesn't work De : freesurfer-boun...@nmr.mgh.harvar

Re: [Freesurfer] Incorrect segmentation and surface offset

2025-03-26 Thread Douglas N. Greve
What is the command you are using when you see the offset? I assume it is freeview, but what is the full command? Can you send pics of the offset? On 3/25/2025 11:08 AM, Tommaso Mariani wrote: External Email - Use Caution Sorry for the confusion, but as you may have realized I am deal