Re: [Freesurfer] letter

2025-03-07 Thread Del Re, Elisabetta
External Email - Use Caution Hi Bruce, Is it OK to forward to other colleagues? Many thanks Elisabetta Elisabetta C. del Re, Ph.D. Associate Editor, International Journal of Clinical and Health Psychology Schizophrenia Research Assistant Professor Department of Psychiatry H

Re: [Freesurfer] illegal instruction - core dumped with samseg lesion

2025-03-07 Thread fsbuild
External Email - Use Caution  If you can capture the first 100 or so lines of the core dump file, that could provide some additional information. I don’t see anything in the processor specs that excludes running AVX, SSE, etc. instructions, i.e., it is a recent Intel 14th generat

Re: [Freesurfer] letter

2025-03-07 Thread Shawn Flanagan
External Email - Use Caution Signed. Thank you for leading on this Bruce. Best, Shawn On Fri, Mar 7, 2025 at 10:24 AM Fischl, Bruce R.,PHD < bfis...@mgh.harvard.edu> wrote: > Hello FS List > > > > I’m sending the following letter: > > > > > https://secure-web.cisco.com/1Umc7TP

Re: [Freesurfer] illegal instruction - core dumped with samseg lesion

2025-03-07 Thread Paola Di Filippo
External Email - Use Caution Hi, I am running Ubuntu 22 on a virtual machine (VMBox 6), on windows 11. My processor is Intel(R) Core(TM) i5-14600K 3.50 GHz, with 64,0 GB RAM (63,8 GB utilizzabile). Is the processor the problem? Thank you in advance Il giorno ven 7 mar 2025 alle 0

Re: [Freesurfer] Freesurfer 8.0 without processing directives

2025-03-07 Thread Ben Wagner
External Email - Use Caution Hi Yujing, I’ve been running “recon-all -s SUBJECT -i T1.nii” without any processing flags to import subjects since at least 5.3 (around 2013). Somewhere back then it was a recommended pattern even if the tsch usage verbiage from that version call

Re: [Freesurfer] letter

2025-03-07 Thread Fischl, Bruce R.,PHD
Yes! Send to anyone/everyone you want to. From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Del Re, Elisabetta Sent: Friday, March 7, 2025 10:52 AM To: freesurfer (freesurfer@nmr.mgh.harvard.edu) Subject: Re: [Freesurfer] letter External Email - Use Caution Hi Bruce, Is it OK

[Freesurfer] letter

2025-03-07 Thread Fischl, Bruce R.,PHD
Hello FS List I'm sending the following letter: https://docs.google.com/document/d/1pie-bVZHm_iQneZrfkGKX8hiRXLuIJy6CvuXjcnQJJE/edit?usp=sharing to the Boston Globe. Anyone in the US that wants to sign it is welcome to paste their signature in at the end. IMO if your immigration status is vulne

Re: [Freesurfer] Hypothalamic subunits segmentation: volumes = 0

2025-03-07 Thread Iglesias Gonzalez, Juan E.
Dear Migueel Ángel, Which is the problematic subregion? Also: would you be able / willing to share a problematic case? Cheers, /Eugenio -- Juan Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández Date: Thursday, Mar

Re: [Freesurfer] Hypothalamic subunits segmentation: volumes = 0

2025-03-07 Thread Miguel Ángel Rivas Fernández
External Email - Use Caution Hi Eugenio, I tried running the tool on three subjects: - In one, it shows 0 in the right anterior-inferior and right anterior-superior - In another, it shows 0 in the left anterior-inferior and right anterior-inferior - In the third on

Re: [Freesurfer] Freesurfer 8.0 without processing directives

2025-03-07 Thread Huang, Yujing
That is good suggestion. ‘recon-all’ should check if any processing directive presents before proceeding to process the data. Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Ben Wagner Sent: Friday, March 7, 2025 10:44 AM To: Freesurfer support list Subject: Re: [Freesurfer]