[Freesurfer] Question regarding high Disk IO during Local Gyrification Index calculations,

2025-02-22 Thread Ha, Sung Min
External Email - Use Caution Hello, I am running (recon-all -localGI) command on around ~250 subjects concurrently right now on high performance computing cluster running SLURM using FreeSurfer 6.0. These subjects already have recon-all finished and I am running recon-all -loca

[Freesurfer] Out of Office

2025-02-22 Thread June Kang
External Email - Use CautionI am away till 27th Feburary in a conference, and will be delayed in responding to email.Thank you for your understanding학회 참석으로 인해 27일까지 메일 회신이 다소 늦을 수 있습니다.양해 부탁드립니다. ___ Freesurfer mailing list Freesurfer@nmr

Re: [Freesurfer] *** buffer overflow detected ***

2025-02-22 Thread fsbuild
External Email - Use Caution  If I understand the recon-all script correctly, the default is to run with -openmp 1 and even if you were to instead specify the available -DoParallel option, that would set openmp to 4 threads (and itkthreads to 4) to do work in parallel.   I don't